Jatropha Genome Database

JcCB0125761.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0125761.10 + phase: 0 /partial
         (209 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01035591001 assembled CDS                                       126   6e-30

>GSVIVT01035591001 assembled CDS
          Length = 884

 Score =  126 bits (317), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 68/155 (43%), Positives = 96/155 (61%), Gaps = 2/155 (1%)

Query: 2   NIFVNGINLNLSSKPASADQLVAGSIILASLCAALDRIEFICEASYNLLWIQKYDIDILL 61
           +I V+G++  +S + AS  QLVAGSIILAS+C A+D I FICEASY++  + + D  +LL
Sbjct: 494 SILVDGVDRIMSFETASTHQLVAGSIILASICTAIDHIGFICEASYDIFRMHRSDSSLLL 553

Query: 62  AALHVFAYLGGDKFFSMKEYNLTMKVLKSIIIFLEGHXXXXXXXXXXXXXXXXGMKFHPC 121
             LHVFA++ G K+F++  Y L M V+KS++   EG                   +F PC
Sbjct: 554 TILHVFAHVCGKKYFTLSNYCLIMTVMKSLVTISEGRNLSIKTTSCLSSQSKVQNEFPPC 613

Query: 122 GKCPF--DAVSVDMVVSELLEKFQSCALSVSMHQH 154
            KCPF  +A SVD+V+S LLEK Q  A+S ++ Q 
Sbjct: 614 IKCPFSQNAASVDIVISLLLEKLQDYAISDAVDQE 648