Jatropha Genome Database

JcCB0125691.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0125691.10 + phase: 0 /pseudo
         (202 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01013761001 assembled CDS                                       229   8e-61
GSVIVT01007735001 assembled CDS                                       229   9e-61

>GSVIVT01013761001 assembled CDS
          Length = 419

 Score =  229 bits (583), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 116/170 (68%), Positives = 134/170 (78%), Gaps = 2/170 (1%)

Query: 11  VSGSLIKVVYFSRNRDSSVDHKG-ESSSNDNP-GVFNGNRKHTVLKGKLHFAKFETSKIN 68
           + G+LIK+VYFSRN   SVD KG +S   D+P  V   N  + +L G++HFAKFET K+N
Sbjct: 32  IGGTLIKLVYFSRNDSWSVDDKGAKSPKGDSPLRVSCSNLDYPILYGRIHFAKFETIKVN 91

Query: 69  DCLEFISSKKHHLGGFQHHENPAKDKKFIKATGGGAYKFAELFKEKLGIGLDKEDEMDCL 128
           +CLEFI SKK   GG  HHE P  DK  IKATGGGAYKFA+LFKE LG+ LDKEDEMDCL
Sbjct: 92  ECLEFIRSKKLLHGGCWHHEAPVSDKNVIKATGGGAYKFADLFKENLGLNLDKEDEMDCL 151

Query: 129 VAGANFLLKAVPREVYTYVDGHKEFLQIDHNDLYPYLLVNIGSGVSMIKV 178
           V+GANFLLKAV  E +TY+DG KEF+QIDHNDLYPYLLVNIGSGVSM+KV
Sbjct: 152 VSGANFLLKAVHHEAFTYMDGQKEFVQIDHNDLYPYLLVNIGSGVSMLKV 201


>GSVIVT01007735001 assembled CDS
          Length = 988

 Score =  229 bits (583), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 112/173 (64%), Positives = 138/173 (79%), Gaps = 5/173 (2%)

Query: 11  VSGSLIKVVYFSRNRDSSVDHKGESSSNDNPGVFNGNRK-HTVLKGKLHFAKFETSKIND 69
           + GSLIK+VYFSR+ D S+D K + S  +  GV NGNR+ + +L G+LHF KFETSKIN+
Sbjct: 53  IGGSLIKLVYFSRHEDRSIDDKRKRSIKERLGVTNGNRRSYPILGGRLHFVKFETSKINE 112

Query: 70  CLEFISSKKHHLGGFQHH----ENPAKDKKFIKATGGGAYKFAELFKEKLGIGLDKEDEM 125
           CL+FI+SK+ H GG        E P  D   IKATGGGA+KFA+LFKE+LG+ +DKEDEM
Sbjct: 113 CLDFINSKQLHRGGMDSRLWLSEAPPSDDVIIKATGGGAHKFADLFKERLGVSIDKEDEM 172

Query: 126 DCLVAGANFLLKAVPREVYTYVDGHKEFLQIDHNDLYPYLLVNIGSGVSMIKV 178
           DCLVAGANFLLKA+  E +T+++GHKEF+QIDHNDL+PYLLVNIGSGVSMIKV
Sbjct: 173 DCLVAGANFLLKAIRHEAFTHMEGHKEFVQIDHNDLFPYLLVNIGSGVSMIKV 225