Jatropha Genome Database

JcCB0125511.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0125511.10 - phase: 0 /pseudo
         (231 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01017948001 assembled CDS                                       395   e-111
GSVIVT01035450001 assembled CDS                                       308   1e-84
GSVIVT01020222001 assembled CDS                                       109   9e-25
GSVIVT01028700001 assembled CDS                                        97   8e-21
GSVIVT01007787001 assembled CDS                                        91   4e-19

>GSVIVT01017948001 assembled CDS
          Length = 329

 Score =  395 bits (1015), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 188/216 (87%), Positives = 202/216 (93%), Gaps = 2/216 (0%)

Query: 1   MGDIACSNGI-TNGKCHSSPNGYRKSCWYEEEIEENLRWCFALNSILHTGASQYQDIALL 59
           MGDI+CSNG   NGK HS   GYRKSCWYEEEIEENLRWCFALNSILHTGA+QYQDIALL
Sbjct: 1   MGDISCSNGNEVNGKSHSLA-GYRKSCWYEEEIEENLRWCFALNSILHTGATQYQDIALL 59

Query: 60  DTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHSNPKSIFIMGGGEGSTAREILRH 119
           DTKPFGKALVIDGKLQSAE+DEFIYHESLVHPALLHH NPKSIFIMGGGEGSTAREILRH
Sbjct: 60  DTKPFGKALVIDGKLQSAEIDEFIYHESLVHPALLHHPNPKSIFIMGGGEGSTAREILRH 119

Query: 120 RTVEKVVMCDIDEEVVDFCKAYLVVNREAFCDQRLEIIINDARTELQSRKECYDLIIGDL 179
           +TVEKVVMCDIDEEVVDFCK+YLVVNREAFCD RLE++INDAR EL+SR+EC+D+IIGDL
Sbjct: 120 KTVEKVVMCDIDEEVVDFCKSYLVVNREAFCDPRLELVINDARAELESREECFDVIIGDL 179

Query: 180 ADPIEGGPCYKLYTKSFYEFTVKPKLNEAGIFVTQV 215
           ADPIEGGPCY+LYTKSFYE TVKP+L+  GIFVTQ 
Sbjct: 180 ADPIEGGPCYQLYTKSFYESTVKPRLSPGGIFVTQA 215


>GSVIVT01035450001 assembled CDS
          Length = 336

 Score =  308 bits (789), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 140/189 (74%), Positives = 165/189 (87%)

Query: 26  CWYEEEIEENLRWCFALNSILHTGASQYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYH 85
           CWYEE I++NL+W FALNS+LH G SQYQDI LLDTK FGKALVIDGK+QSAEVDEFIYH
Sbjct: 32  CWYEEVIDDNLKWSFALNSVLHKGTSQYQDIVLLDTKHFGKALVIDGKMQSAEVDEFIYH 91

Query: 86  ESLVHPALLHHSNPKSIFIMGGGEGSTAREILRHRTVEKVVMCDIDEEVVDFCKAYLVVN 145
           E L+HPALL H NPK+IFIMGGGEGS ARE LRH ++EKVVMCDID+EVVDFC+ YL VN
Sbjct: 92  ECLIHPALLCHPNPKTIFIMGGGEGSAAREALRHNSIEKVVMCDIDQEVVDFCRRYLTVN 151

Query: 146 REAFCDQRLEIIINDARTELQSRKECYDLIIGDLADPIEGGPCYKLYTKSFYEFTVKPKL 205
           +EAF +++L ++INDA+ EL+ R E +D+I+GDLADP+EGGPCY+LYTKSFYE  +KPKL
Sbjct: 152 QEAFRNKKLNLVINDAKAELERRNEKFDIIVGDLADPVEGGPCYQLYTKSFYERILKPKL 211

Query: 206 NEAGIFVTQ 214
           N  GIFVTQ
Sbjct: 212 NVNGIFVTQ 220


>GSVIVT01020222001 assembled CDS
          Length = 297

 Score =  109 bits (273), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 61/174 (35%), Positives = 94/174 (54%), Gaps = 4/174 (2%)

Query: 42  LNSILHTGASQYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHSNPKS 101
           +  IL    S YQ++ +  +  +GK LV+DG +Q  E DE  Y E + H  L    NPK 
Sbjct: 25  VEKILFQEKSDYQNVMVFQSATYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNPKK 84

Query: 102 IFIMGGGEGSTAREILRHRTVEKVVMCDIDEEVVDFCKAYLVVNREAFCDQRLEIIINDA 161
           + ++GGG+G   RE+ RH +VE++ +C+ID  VVD  K +       + D R+ + I D 
Sbjct: 85  VLVIGGGDGGVLREVARHSSVEQIDICEIDGMVVDVSKKFFPDVAIGYDDPRVNLHIGDG 144

Query: 162 RTELQSRKE-CYDLIIGDLADPIEGGPCYKLYTKSFYEFTVKPKLNEAGIFVTQ 214
              +++  E  YD +I D +DPI  GP  +L+ K F+  +V   L   G+  TQ
Sbjct: 145 VAFMKNAPEGTYDAVIVDSSDPI--GPAQELFEKPFFA-SVARALRPGGVVCTQ 195


>GSVIVT01028700001 assembled CDS
          Length = 355

 Score = 96.7 bits (239), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 62/171 (36%), Positives = 99/171 (57%), Gaps = 4/171 (2%)

Query: 42  LNSILHTGASQYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHSNPKS 101
           + +IL  G S++Q+I + ++  +GK LV+DG +Q +E DE  Y E + H  L    +PK 
Sbjct: 72  VENILFQGKSEFQEILVFESSAYGKVLVLDGIVQLSEKDECAYQEMIAHLPLCSIESPKR 131

Query: 102 IFIMGGGEGSTAREILRHRTVEKVVMCDIDEEVVDFCKAYLVVNREAFCDQRLEIIINDA 161
           + ++GGG+G   REI RH +VE + +C+ID+ V+D CK +       F D R+++ + DA
Sbjct: 132 VLVVGGGDGGVLREISRHSSVELIDICEIDKMVIDVCKKFFPQLYVGFEDPRVQLHVGDA 191

Query: 162 RTELQSRKEC-YDLIIGDLADPIEGGPCYKLYTKSFYEFTVKPKLNEAGIF 211
              L+   E  YD II D +DP+  GP  +L  + F+E T +  L   G+ 
Sbjct: 192 VEFLRHVPEGKYDAIIVDSSDPV--GPAQELVERPFFETTAR-ALRPGGVL 239


>GSVIVT01007787001 assembled CDS
          Length = 374

 Score = 90.9 bits (224), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 60/177 (33%), Positives = 93/177 (52%), Gaps = 3/177 (1%)

Query: 39  CFALNSILHTGASQYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHSN 98
            + +  +L  G S+YQ++ + ++   GK +++DG LQ +E DEF+Y E L H AL    N
Sbjct: 100 VYKVEKVLFRGKSEYQELFIFESATSGKIVILDGYLQLSEKDEFVYQEMLTHLALCSIPN 159

Query: 99  PKSIFIMGGGEGSTAREILRHRTVEKVVMCDIDEEVVDFCKAYLVVNREAFCDQRLEIII 158
           PK + ++GGG+G   RE  RH ++E++ +C+ID+ V+D  K +       F D R+ + I
Sbjct: 160 PKKVLLVGGGDGGILREASRHSSLEQIDICEIDKMVIDVYKQFFPDIAVGFEDPRVSVYI 219

Query: 159 NDARTELQSRKEC-YDLIIGDLADPIEGGPCYKLYTKSFYEFTVKPKLNEAGIFVTQ 214
            D    L+S  E  YD II D     E GP  +         +V   L   G+  TQ
Sbjct: 220 GDGVEFLKSVPEATYDAIILDAFQ--EMGPSAQELADKHILESVARALRPGGVLSTQ 274