Jatropha Genome Database

JcCB0125201.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0125201.10 + phase: 1 /pseudo/partial
         (568 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01024713001 assembled CDS                                      1031   0.0  
GSVIVT01002468001 assembled CDS                                        53   4e-07

>GSVIVT01024713001 assembled CDS
          Length = 583

 Score = 1031 bits (2665), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 485/556 (87%), Positives = 510/556 (91%)

Query: 7   LKHRGPDWSGLYQQGDFYLAHQRLAIIDPASGDQPLFNEDKAIVVTVNGEIYNHEELRKR 66
           LKHRGPDWSGLYQ GD YLAHQRLAIIDPASGDQPL+NE++AIVVTVNGEIYNHEELRK 
Sbjct: 28  LKHRGPDWSGLYQHGDCYLAHQRLAIIDPASGDQPLYNENQAIVVTVNGEIYNHEELRKS 87

Query: 67  LPNHKFRTGSDCDVIAHLYEEYGENFVDMLDGMFSFVILDTRDNSYIVARDAIGITSLYI 126
           +PNHKFRTGSDCDVIAHLYEE+GENFVDMLDGMFSFV+LDTRD+S+IVARDAIGITSLYI
Sbjct: 88  MPNHKFRTGSDCDVIAHLYEEHGENFVDMLDGMFSFVLLDTRDDSFIVARDAIGITSLYI 147

Query: 127 GWGLDGSIWIASELKGLNDDCEHFESFPPGHLYSSKSGGLRPWYNPPWFSDVIPSTPYDP 186
           GWGLDGS+WI+SELKGLNDDCEHFESFPPGH+YSSK GG + WYNPPWFS+ IPS PYDP
Sbjct: 148 GWGLDGSVWISSELKGLNDDCEHFESFPPGHMYSSKEGGFKRWYNPPWFSEAIPSAPYDP 207

Query: 187 LALRRAFENAVVKRLMTDVPFXXXXXXXXXXXXXXXITARHLAGTKAAKQWGSQLHSFCV 246
           L LRRAFENAV+KRLMTDVPF               ITARHLAGTKAAKQWG+QLHSFCV
Sbjct: 208 LVLRRAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAAKQWGAQLHSFCV 267

Query: 247 GLEGSPDLKAAKEVADYLGTVHHEFHFTVQDGIDAIEDVIYHIETYDVTTIRASTPMFLM 306
           GLEGSPDLKAAKEVADYLGTVHHEFHFTVQDGIDAIEDVIYHIETYDVTTIRASTPMFLM
Sbjct: 268 GLEGSPDLKAAKEVADYLGTVHHEFHFTVQDGIDAIEDVIYHIETYDVTTIRASTPMFLM 327

Query: 307 SRKIKALGVKMVLSGEGSDEVFGGYLYFHKAPNKEEFHRETCRKIKALHQYDCLRANKAT 366
           SRKIK+LGVKMV+SGEGSDE+FGGYLYFHKAPNKEEFHRETCRKIKAL+QYDCLRANK+T
Sbjct: 328 SRKIKSLGVKMVISGEGSDEIFGGYLYFHKAPNKEEFHRETCRKIKALYQYDCLRANKST 387

Query: 367 SAWGLEARVPFLDKEFINVAMAIDPEWKMIKPEQGRIEKWVLRRAFDDEEQPYLPKHILY 426
           SAWGLEARVPFLDKEFI VAM IDPEWKMIKPEQGRIEKWVLRRAFDDEEQPYLPKHILY
Sbjct: 388 SAWGLEARVPFLDKEFIKVAMDIDPEWKMIKPEQGRIEKWVLRRAFDDEEQPYLPKHILY 447

Query: 427 RQKEQFSDGVGYSWIDGLKAHAAQHVTDKMMQNAGHIFPHNTPTTKEAYYYRMIFERFFP 486
           RQKEQFSDGVGYSWIDGLKAHA+QHVTDKMM NA HIFPHNTPTTKEAYYYRMIFERFFP
Sbjct: 448 RQKEQFSDGVGYSWIDGLKAHASQHVTDKMMLNASHIFPHNTPTTKEAYYYRMIFERFFP 507

Query: 487 QNSARLTVPGGASVACSTAKAVEWDATWSNNLDPSGRAALGVHLXXXXXXXXXXXXXMVT 546
           QNSARLTVPGGASVACSTAKAVEWD+ WSNNLDPSGRAALGVHL              V 
Sbjct: 508 QNSARLTVPGGASVACSTAKAVEWDSAWSNNLDPSGRAALGVHLSAYDQKLTTVSAANVP 567

Query: 547 PNIIDSIPRMMEVTAP 562
             IID++PR+MEVTAP
Sbjct: 568 TKIIDNMPRIMEVTAP 583


>GSVIVT01002468001 assembled CDS
          Length = 55

 Score = 53.1 bits (126), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 21/28 (75%), Positives = 24/28 (85%)

Query: 7  LKHRGPDWSGLYQQGDFYLAHQRLAIID 34
          L+HRGPDWSGL+   D YLAHQRLAI+D
Sbjct: 28 LRHRGPDWSGLHCHQDCYLAHQRLAIVD 55