Jatropha Genome Database

JcCB0124931.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0124931.10 + phase: 0 /pseudo/partial
         (311 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01016375001 assembled CDS                                       490   e-139

>GSVIVT01016375001 assembled CDS
          Length = 553

 Score =  490 bits (1262), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 237/298 (79%), Positives = 258/298 (86%), Gaps = 10/298 (3%)

Query: 24  HSWTASPTTLGKEMAVFAVRLSEQRQEISQVKIKGKFAGAVGNYNAHIVAYPNVNWPLIA 83
           H   ASPTTLGKEMA+FAVRLS +RQ+ISQV+I GKFAGAVGNYNAH++AYP++NWP IA
Sbjct: 252 HGQPASPTTLGKEMAIFAVRLSRERQDISQVEIMGKFAGAVGNYNAHLIAYPDINWPQIA 311

Query: 84  KEFVESLGLYFNPYVTQIEPHDYMARLFQAIIVFNNILIDFDRDIWGYISLAYFKQITKA 143
           +EFV+SLGL FNPYVTQIE HDYMA+LF  II FNNILIDFDRDIW YIS+ YFKQITKA
Sbjct: 312 EEFVKSLGLSFNPYVTQIETHDYMAKLFHGIIQFNNILIDFDRDIWSYISVGYFKQITKA 371

Query: 144 GEIGSSTMPHKVNPIDFENSEGNLGKANGGLSHLSEKLPISRWQE----------YGEGL 193
           GEIGSSTMPHKVNPIDFENSEGNLGKANGGLSHLS KLPISRWQ            GEGL
Sbjct: 372 GEIGSSTMPHKVNPIDFENSEGNLGKANGGLSHLSMKLPISRWQRDLTDSTVLRNMGEGL 431

Query: 194 GHSLLAYRSALQGIGKLQVNESRLSEDLNHSWEVLAEPIQTVMRRYGVPEPYEKLKELTR 253
           GHSLLAY+S+LQGI KLQVNE+ LSEDLN SWEVLAEPIQTVMRRYGVPEPYEKLKELTR
Sbjct: 432 GHSLLAYKSSLQGIAKLQVNEACLSEDLNQSWEVLAEPIQTVMRRYGVPEPYEKLKELTR 491

Query: 254 GRAVTKESIREFIEGLELPKETKAYLLELSPHNYVGAAIELGKTVDVTMNLINGVTAL 311
           GRAVT+ESIREFIEGLELPKE K  LL L+PH YVGAAIEL + V+  +NL+NG  AL
Sbjct: 492 GRAVTRESIREFIEGLELPKEAKTNLLNLTPHTYVGAAIELARAVERAVNLVNGFKAL 549