Jatropha Genome Database

JcCB0124231.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0124231.10 - phase: 0 /TE/partial
         (901 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01012382001 assembled CDS                                       197   2e-50
GSVIVT01028343001 assembled CDS                                       159   6e-39
GSVIVT01000641001 assembled CDS                                       156   3e-38
GSVIVT01031724001 assembled CDS                                       145   1e-34
GSVIVT01013655001 assembled CDS                                       118   1e-26
GSVIVT01009548001 assembled CDS                                       100   5e-21
GSVIVT01013341001 assembled CDS                                        97   3e-20
GSVIVT01015960001 assembled CDS                                        88   2e-17
GSVIVT01011334001 assembled CDS                                        87   3e-17
GSVIVT01010555001 assembled CDS                                        86   7e-17
GSVIVT01018138001 assembled CDS                                        66   6e-11
GSVIVT01024357001 assembled CDS                                        60   3e-09

>GSVIVT01012382001 assembled CDS
          Length = 952

 Score =  197 bits (501), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 95/194 (48%), Positives = 129/194 (66%)

Query: 708 VRTLSQFMGEPRLPHWNAALRLLRYIKGTPGQGLLLPSTNNLELKAYCDSDWAGCRMTRR 767
           V  +SQ+M  P + H     R+LRY+K T G+G+++    + ++  + DSDWAG  + RR
Sbjct: 751 VSLVSQYMHAPTVVHLCMVKRILRYLKKTIGRGIVMRRNGHTDIIGFSDSDWAGNTIDRR 810

Query: 768 SISGYCVFLGTSMIXWKSKKXTNVSRSSAEAEYRAMTNACLEITWLQYILRNLGVKIMKS 827
           S +GYC+F+G +++ WKSKK   V+RSSAEAEYRAM  A  E+ WL+ +L +LG      
Sbjct: 811 STTGYCMFVGGNLVSWKSKKQPVVARSSAEAEYRAMAAASCEMVWLKNLLTDLGFSPTSP 870

Query: 828 AKLFCDNQATLHIAANPVFHECTKHIKIDCHIVREKLQLGFIQPCYVPTQMQLADIFTKA 887
            KLFCDNQA +HIAANPVFHE TKHI++DCH +R+++Q   IQ  Y+ +  QLAD FTK 
Sbjct: 871 MKLFCDNQAAMHIAANPVFHERTKHIEVDCHFIRQQVQSKVIQTHYIRSSDQLADAFTKV 930

Query: 888 LGREQFEYLRSKLG 901
           L    F  L  KLG
Sbjct: 931 LSSTVFHRLMFKLG 944


>GSVIVT01028343001 assembled CDS
          Length = 2295

 Score =  159 bits (402), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 76/136 (55%), Positives = 99/136 (72%)

Query: 766  RRSISGYCVFLGTSMIXWKSKKXTNVSRSSAEAEYRAMTNACLEITWLQYILRNLGVKIM 825
            RRS SGYCVF+G ++I WKSKK   V+RSSAEAEYRAM  A  E+ WL+++L+ L     
Sbjct: 1467 RRSTSGYCVFIGGNLISWKSKKQDVVARSSAEAEYRAMALATCELIWLRHLLQELRFGKD 1526

Query: 826  KSAKLFCDNQATLHIAANPVFHECTKHIKIDCHIVREKLQLGFIQPCYVPTQMQLADIFT 885
            +  KL CDNQA LHIA+NPVFHE TKHI++DCH +REK+  G +   +V +  QLADIFT
Sbjct: 1527 EQMKLICDNQAALHIASNPVFHERTKHIEVDCHFIREKIASGCVATSFVNSNDQLADIFT 1586

Query: 886  KALGREQFEYLRSKLG 901
            K+L   + +Y+ +KLG
Sbjct: 1587 KSLRGPRIKYICNKLG 1602


>GSVIVT01000641001 assembled CDS
          Length = 947

 Score =  156 bits (395), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 86/227 (37%), Positives = 130/227 (57%)

Query: 671 LKLTSTDGEILHNPTKFRRLVGRLIYLTVTRPEIVYAVRTLSQFMGEPRLPHWNAALRLL 730
           LKL    G    +   ++++VG L+YLT TRP+I+++V  +S++M  P   H+ AA ++ 
Sbjct: 220 LKLNKDHGGKKVDSIIYKQIVGSLMYLTATRPDIMHSVSLISRYMENPTELHFLAAKKIC 279

Query: 731 RYIKGTPGQGLLLPSTNNLELKAYCDSDWAGCRMTRRSISGYCVFLGTSMIXWKSKKXTN 790
           RY++GT   GL        +L  + DSD+AG +  RRS SGY   LGT  + W SKK   
Sbjct: 280 RYLQGTKDFGLFYKKGKRSDLIGFTDSDYAGDQDNRRSTSGYVFMLGTGAVSWSSKKQPI 339

Query: 791 VSRSSAEAEYRAMTNACLEITWLQYILRNLGVKIMKSAKLFCDNQATLHIAANPVFHECT 850
           V+ S+ EAE+ A T    +  WL+ IL  L +K + +  +FCDN +T+ ++ NPV H  +
Sbjct: 340 VTLSTTEAEFVAATVCACQAIWLRKILEELHLKQVGATTIFCDNSSTIKLSKNPVLHGRS 399

Query: 851 KHIKIDCHIVREKLQLGFIQPCYVPTQMQLADIFTKALGREQFEYLR 897
           KHI +  + +R+    G I   Y  ++ Q+ADIFTK L    F  LR
Sbjct: 400 KHIDVKYYFLRDLSNDGVIDLVYCRSENQVADIFTKPLKLAVFLELR 446


>GSVIVT01031724001 assembled CDS
          Length = 1135

 Score =  145 bits (365), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 77/185 (41%), Positives = 108/185 (58%)

Query: 647  YALDILQDTGLLGAKPEAFPMEQQLKLTSTDGEILHNPTKFRRLVGRLIYLTVTRPEIVY 706
            Y  D+LQ  GL  +K    PM     L+  DG    +PT +R LVG L Y T+TRP+I Y
Sbjct: 950  YICDLLQRAGLSESKLVTSPMAVGHVLSIADGTRFEDPTLYRSLVGALQYCTITRPDIAY 1009

Query: 707  AVRTLSQFMGEPRLPHWNAALRLLRYIKGTPGQGLLLPSTNNLELKAYCDSDWAGCRMTR 766
             +    QFM  P   H  A  R+LRY+KG+   GL    +++L+L AY D+D A C   R
Sbjct: 1010 TINKFFQFMHAPTSTHLQAVKRVLRYLKGSLFYGLSFQPSSSLDLIAYTDADGASCPDDR 1069

Query: 767  RSISGYCVFLGTSMIXWKSKKXTNVSRSSAEAEYRAMTNACLEITWLQYILRNLGVKIMK 826
            RS +GYC+F   ++I W + K   VSRSS E++YR + NA +E+TW+Q +L+ L V + +
Sbjct: 1070 RSTNGYCIFFRGNLISWSASKQKVVSRSSIESKYRGLANATIELTWIQSLLKELFVPLFQ 1129

Query: 827  SAKLF 831
               LF
Sbjct: 1130 PPVLF 1134


>GSVIVT01013655001 assembled CDS
          Length = 4396

 Score =  118 bits (296), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 60/132 (45%), Positives = 80/132 (60%)

Query: 711  LSQFMGEPRLPHWNAALRLLRYIKGTPGQGLLLPSTNNLELKAYCDSDWAGCRMTRRSIS 770
            LSQFM +P   HWNA  RLLRY+ GT   G+ L  T+ L L A+ DSDWAG +    S S
Sbjct: 4258 LSQFMHQPTSDHWNAVKRLLRYLCGTLDHGITLRRTSPLALHAFSDSDWAGNKDDFTSTS 4317

Query: 771  GYCVFLGTSMIXWKSKKXTNVSRSSAEAEYRAMTNACLEITWLQYILRNLGVKIMKSAKL 830
             Y ++LG + I W SKK   V+RSS EAEYR++ +   EI W+  +L  LGV + +   +
Sbjct: 4318 AYIIYLGHNPISWSSKKQRTVARSSTEAEYRSVASTAAEIRWICSLLTELGVTLPQQPVI 4377

Query: 831  FCDNQATLHIAA 842
            +CDN    H+ A
Sbjct: 4378 YCDNVGATHLCA 4389


>GSVIVT01009548001 assembled CDS
          Length = 849

 Score = 99.8 bits (247), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 63/205 (30%), Positives = 107/205 (52%), Gaps = 3/205 (1%)

Query: 687 FRRLVGRLIYL-TVTRPEIVYAVRTLSQFMGEPRLPHWNAALRLLRYIKGTPGQGLLLPS 745
           +   +G L+Y     RP IV+ V  L +++      HW AA +++RY++ T    L+   
Sbjct: 596 YASAIGSLMYAQACIRPNIVFIVNVLGRYLSNLGQYHWVAAKKVMRYLQRTNDFMLVYRR 655

Query: 746 TNNLELKAYCDSDWAGCRMTRRSISGYCVFLGTSMIXWKSKKXTNVSRSSAEAEYRAMTN 805
            +NLE+  Y +SD+ GC    +S SGY   L    I WKS K + ++ S+  A++ A   
Sbjct: 656 VDNLEVVGYSNSDFNGCSDDCKSTSGYIFMLTGGAISWKSVKQSLIAFSTMYAKFVACYG 715

Query: 806 ACLEITWLQYILRNLGV--KIMKSAKLFCDNQATLHIAANPVFHECTKHIKIDCHIVREK 863
           A  ++ WL+ ++  L V   I +   ++CDN AT+  + N      +KH++I   IV++ 
Sbjct: 716 ASSQVVWLRKLISELQVVDSIFRPIVIYCDNNATVFYSKNNKISTSSKHMEIKYLIVKDL 775

Query: 864 LQLGFIQPCYVPTQMQLADIFTKAL 888
           ++   I   ++ T+  LAD  TK L
Sbjct: 776 VKKEDIVIKHIRTESMLADPLTKGL 800


>GSVIVT01013341001 assembled CDS
          Length = 503

 Score = 97.1 bits (240), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 43/110 (39%), Positives = 69/110 (62%)

Query: 715 MGEPRLPHWNAALRLLRYIKGTPGQGLLLPSTNNLELKAYCDSDWAGCRMTRRSISGYCV 774
           M  P   H N   ++L+Y+KGTP +GL     +  +++A+ D+DWAG    RRS SGYC 
Sbjct: 1   MHSPYEAHMNVVYKILQYLKGTPRKGLHFGKHDQFKIEAFTDADWAGSIEDRRSTSGYCT 60

Query: 775 FLGTSMIXWKSKKXTNVSRSSAEAEYRAMTNACLEITWLQYILRNLGVKI 824
           F+  ++I W+SKK   V+RSSAE ++R++ +   E+ W++ +L  L + I
Sbjct: 61  FVFGNLITWRSKKQNVVARSSAEVKFRSIAHGICEVLWIKRVLEELKITI 110


>GSVIVT01015960001 assembled CDS
          Length = 1205

 Score = 87.8 bits (216), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 35/85 (41%), Positives = 58/85 (68%)

Query: 812 WLQYILRNLGVKIMKSAKLFCDNQATLHIAANPVFHECTKHIKIDCHIVREKLQLGFIQP 871
           W++ +L  L +      KL+CDN+A + +A NPV H+ TKH+++D H ++EK+  G +  
Sbjct: 2   WIRRLLEELKMTGSSPMKLYCDNKAVISVAYNPVLHDRTKHVEVDKHFIKEKIDNGLVCM 61

Query: 872 CYVPTQMQLADIFTKALGREQFEYL 896
            Y+PT+ Q+AD+FTK L + QF++L
Sbjct: 62  TYIPTEEQVADVFTKGLHKRQFDFL 86


>GSVIVT01011334001 assembled CDS
          Length = 640

 Score = 87.4 bits (215), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 46/104 (44%), Positives = 66/104 (63%), Gaps = 1/104 (0%)

Query: 556 FSTFSIAIQQAGYTQSKADYSLFIKVQGTSFTAVLI-YVDDILLTGNNLREIHQLKQTLL 614
           F  F+  ++  GY+   +D++LF+K      TA++I YV DI+LT ++  EI +LK    
Sbjct: 11  FDHFTKVVKGFGYSWCHSDHTLFVKHTVKGRTAIIIVYVGDIILTKDHEEEIGKLKSIFA 70

Query: 615 KRFLIKDLGNLKYFLGIEFSRSQQGIFMSQRKYALDILQDTGLL 658
             F IKDLGNLKYF G+E +RS  GI +SQ KY LD+L +  +L
Sbjct: 71  HEFEIKDLGNLKYFFGMEITRSNMGIVVSQCKYVLDLLTEIEML 114


>GSVIVT01010555001 assembled CDS
          Length = 147

 Score = 86.3 bits (212), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 43/88 (48%), Positives = 57/88 (64%), Gaps = 1/88 (1%)

Query: 507 LDVQNAFLHGDLHEVVYMIPPPRLRQQGENTVCRLHKSLYGLKQASRNWFSTFSIAIQQA 566
           +DV+NAFL+GDL E VYM PPP L  +  N VC L ++LYGLKQA R WF+ FS  I + 
Sbjct: 1   MDVKNAFLNGDLSEEVYMQPPPGLSVE-SNKVCHLRRALYGLKQAPRAWFAKFSSTIFRL 59

Query: 567 GYTQSKADYSLFIKVQGTSFTAVLIYVD 594
           GYT S  D +LF++        +L+Y +
Sbjct: 60  GYTASPYDSALFLRRTDKGTILLLLYSN 87


>GSVIVT01018138001 assembled CDS
          Length = 98

 Score = 66.2 bits (160), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 34/86 (39%), Positives = 52/86 (60%)

Query: 562 AIQQAGYTQSKADYSLFIKVQGTSFTAVLIYVDDILLTGNNLREIHQLKQTLLKRFLIKD 621
           A+   G+  +K+D SLF++   +  T V +YVDDIL+T ++   I  L   L  +F +KD
Sbjct: 12  ALLSFGFVSTKSDQSLFLRFTPSHITYVFVYVDDILVTSSDTTAITSLIAQLNSKFSLKD 71

Query: 622 LGNLKYFLGIEFSRSQQGIFMSQRKY 647
           LG + YFL I+ S +  G+ +SQ KY
Sbjct: 72  LGEVHYFLVIQVSYTNNGLHLSQTKY 97


>GSVIVT01024357001 assembled CDS
          Length = 851

 Score = 60.5 bits (145), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 40/60 (66%)

Query: 398 VEPTSYDQAVLHPHWQKAMDLELQTLERNHTGSLVSLPAGHKPIGCRWVYKIKYNSDGSI 457
           VEP S+++A+    W+KAM+ E+  +E+N T  LV  P   + IG +W+Y++K +SDG I
Sbjct: 727 VEPQSFEEAIKDEDWRKAMEKEIDVIEKNETWQLVEKPIDKEIIGVKWIYRVKCHSDGYI 786