Jatropha Genome Database

JcCB0124021.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0124021.20 - phase: 0 /partial
         (550 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01020711001 assembled CDS                                       712   0.0  

>GSVIVT01020711001 assembled CDS
          Length = 696

 Score =  712 bits (1837), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 351/527 (66%), Positives = 406/527 (77%), Gaps = 12/527 (2%)

Query: 28  FLLLDEDLPPVLQAYPDVSKSLTCLDLLTVSLTDGFKAHEIRVITAACTNLTKFLVVCMF 87
           F    EDLPP LQA+P  + +LT LDL+T+S  +GFK+HEI  ITAAC NL + L+ C F
Sbjct: 178 FYYWTEDLPPALQAHPATAAALTRLDLMTLSFAEGFKSHEILAITAACPNLQQLLIACTF 237

Query: 88  DPSYLGFIGDETLLAIAANCPKLSVLHLVDTSSLGNTRHDPEDEGYTGEDARISVVGLVD 147
           DP Y+GF+GDE ++AIA+NCP L+VLHL DT+SL N R DPE+EG++ EDA IS   L  
Sbjct: 238 DPRYIGFVGDEAIVAIASNCPGLTVLHLADTASLSNGRGDPEEEGFSSEDAGISTTALSG 297

Query: 148 FFSGLPXXXXXXXXXXKNVRDSAVAFEALNSRCPKLKVLNLEQFHGICMAVESQLDGIAL 207
            FSGLP          KNVRDS    E LNSRCPKL+VL L  FHG+C+A+ SQLDG+AL
Sbjct: 298 LFSGLPLLQELVLDVCKNVRDSGATLEMLNSRCPKLRVLKLGHFHGLCLAIGSQLDGVAL 357

Query: 208 CSGLESLSIKKAADLTDMGLIEIARGCHKLAKFEVEGCKKITMKGIRTMASLLHKTLIEV 267
           C GLESLSIK +ADLTDMGLI IARGC KLAKFE+ GCKK+T KGI TMA L   TL+E 
Sbjct: 358 CQGLESLSIKNSADLTDMGLIAIARGCSKLAKFEIHGCKKVTWKGISTMACLRRSTLVEF 417

Query: 268 KISACKNLDTAAILRALEPIRSRIERLHIDCIWDGLPESTCAANHSFNLNDNLF--DESS 325
           KIS CKNLD  + LR LEPIR RI+RLHIDCIWD        + H  + +D+ F   E+S
Sbjct: 418 KISCCKNLDAVSALRGLEPIRDRIQRLHIDCIWD-------RSEHIPSQDDDRFWDHEAS 470

Query: 326 SKNKRLKYSS--DARYVESDLDGFWCKSWDKLRYLSLWIGVGELLNPLPMAGLEDCPSLE 383
            K K+ KY++  DA Y +++ +G   K+W++LR LSLWIGVGELL PL  AGL+DCP LE
Sbjct: 471 IKKKKRKYTTDLDASYEQNNGNGICSKTWERLRCLSLWIGVGELLPPLAKAGLDDCPCLE 530

Query: 384 EIRIRVEGDCRGRHKPLQHAFGLSCLAQYHRLSKMQLDCSDTIGFALTAPSGQMDLSLWE 443
           EI+I+VEGDCR R KP Q  FGLS L +Y RLSKM+LDC DTIG+ALTAPSGQ DLS WE
Sbjct: 531 EIQIKVEGDCRERSKPSQ-PFGLSSLMRYPRLSKMKLDCGDTIGYALTAPSGQTDLSTWE 589

Query: 444 RFFLNGIGNLSLNELDYWPPQDRDVNQRSLSLPGAGLLAECLTLRKLFIHGTAHEHFMMF 503
           RF+LNGI NL+LNELDYWPPQD+DVN RSLSLP AGLLAEC+TLRKLFIHGTAHEHFM F
Sbjct: 590 RFYLNGIKNLTLNELDYWPPQDKDVNHRSLSLPSAGLLAECVTLRKLFIHGTAHEHFMTF 649

Query: 504 LLRIPNLRDVQLREDYYPAPENDMSTEMRADSCCRFEDALNRRHILD 550
           LL IPNLRDVQLREDYYPAPENDMSTEMR DSC RFEDALNRR ILD
Sbjct: 650 LLAIPNLRDVQLREDYYPAPENDMSTEMRIDSCSRFEDALNRRRILD 696