Jatropha Genome Database

JcCB0124021.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0124021.10 + phase: 0 /pseudo/partial
         (122 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01020712001 assembled CDS                                       132   5e-32
GSVIVT01021221001 assembled CDS                                        65   9e-12
GSVIVT01035409001 assembled CDS                                        55   1e-08
GSVIVT01009192001 assembled CDS                                        52   8e-08
GSVIVT01034710001 assembled CDS                                        47   1e-06
GSVIVT01033779001 assembled CDS                                        46   4e-06

>GSVIVT01020712001 assembled CDS
          Length = 817

 Score =  132 bits (331), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 58/69 (84%), Positives = 66/69 (95%)

Query: 54  LYAVCTLNRPWEGVPPERVVYAVANEGSRLEIPEGPLGRLISDCWAEPHERPSCEEILSR 113
           ++ +CTLNRPWEGVPPERVVYAVA+EGSRL+IPEGPLG LI+DCWAEPH+RPSCE+ILSR
Sbjct: 749 MWELCTLNRPWEGVPPERVVYAVAHEGSRLDIPEGPLGMLIADCWAEPHQRPSCEDILSR 808

Query: 114 LLDCEYTLC 122
           L DCEYTLC
Sbjct: 809 LQDCEYTLC 817


>GSVIVT01021221001 assembled CDS
          Length = 52

 Score = 64.7 bits (156), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 30/52 (57%), Positives = 38/52 (73%)

Query: 60  LNRPWEGVPPERVVYAVANEGSRLEIPEGPLGRLISDCWAEPHERPSCEEIL 111
           +N     VP  +V+YAVAN+G RLEIPE P G+LI+DCW EP E P+C+ IL
Sbjct: 1   MNPLQRSVPSAQVIYAVANDGLRLEIPECPFGKLIADCWVEPDEGPNCDVIL 52


>GSVIVT01035409001 assembled CDS
          Length = 876

 Score = 54.7 bits (130), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/70 (42%), Positives = 45/70 (64%), Gaps = 4/70 (5%)

Query: 54  LYAVCTLNRPWEGVPPERVVYAVANEGSRLEIPE--GPL-GRLISDCW-AEPHERPSCEE 109
           L+ + TL  PW G+ P +VV AV  +  RLEIPE   P+  ++I+DCW  EP +RPS  +
Sbjct: 792 LWELATLRIPWSGMNPMQVVGAVGFQDRRLEIPEEVDPMVAQIINDCWEVEPRKRPSFSQ 851

Query: 110 ILSRLLDCEY 119
           ++SRL   ++
Sbjct: 852 LMSRLKHLQH 861


>GSVIVT01009192001 assembled CDS
          Length = 905

 Score = 51.6 bits (122), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 26/65 (40%), Positives = 38/65 (58%), Gaps = 4/65 (6%)

Query: 54  LYAVCTLNRPWEGVPPERVVYAVANEGSRLEIPEGP---LGRLISDCWA-EPHERPSCEE 109
           L+ + T+ +PW G+ P +VV AVA +  RL IP+     L  L+  CWA +P +RPS   
Sbjct: 825 LWELVTMQQPWNGLSPAQVVGAVAFQNRRLSIPQNTSPVLASLMESCWADDPAQRPSFSS 884

Query: 110 ILSRL 114
           I+  L
Sbjct: 885 IVETL 889


>GSVIVT01034710001 assembled CDS
          Length = 758

 Score = 47.4 bits (111), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/56 (48%), Positives = 35/56 (62%), Gaps = 4/56 (7%)

Query: 54  LYAVCTLNRPWEGVPPERVVYAVANEGSRLEIP---EGPLGRLISDCWA-EPHERP 105
           L+ + TL RPW+ + P +VV AVA +G RLEIP      +  LI  CWA EP +RP
Sbjct: 671 LWELVTLQRPWKHLNPAQVVAAVAFKGKRLEIPAEVNHQVAYLIEACWANEPSKRP 726


>GSVIVT01033779001 assembled CDS
          Length = 745

 Score = 46.2 bits (108), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 37/65 (56%), Gaps = 4/65 (6%)

Query: 54  LYAVCTLNRPWEGVPPERVVYAVANEGSRLEIPEG---PLGRLISDCWA-EPHERPSCEE 109
           L+ + TL +PW  + P +VV AV  +G RLEIP      +  +I  CWA EP +RPS   
Sbjct: 661 LWELATLQQPWSNLNPAQVVAAVGFKGKRLEIPRDLNPQVASIIEACWANEPWKRPSFFN 720

Query: 110 ILSRL 114
           I+  L
Sbjct: 721 IMESL 725