Jatropha Genome Database

JcCB0123131.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0123131.20 + phase: 0 
         (523 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01026648001 assembled CDS                                       583   e-167
GSVIVT01015656001 assembled CDS                                       101   1e-21
GSVIVT01005932001 assembled CDS                                        99   5e-21
GSVIVT01038268001 assembled CDS                                        98   7e-21

>GSVIVT01026648001 assembled CDS
          Length = 556

 Score =  583 bits (1504), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 315/514 (61%), Positives = 364/514 (70%), Gaps = 17/514 (3%)

Query: 1   MSEPPSYPPIDPTTFDLIVVGTGLPESVIAAAASASGKSVLHLDHNHFYGSHFSSLSIPD 60
           M E PSYPPI+PT FDLIVVGTGLP+SVIAAAAS++GKSVLHLD N FYGSHFSSL++ +
Sbjct: 1   MDETPSYPPIEPTDFDLIVVGTGLPQSVIAAAASSAGKSVLHLDSNSFYGSHFSSLNLDE 60

Query: 61  LXXXXXXXXXXXXXXXX--XXXXANADDFSVVNLAIRPLYSDVEISSFSAQLLQEHSNKF 118
                                  A+A ++  ++L  RP+YSDVEI+S S+  + EHS KF
Sbjct: 61  FSSFLTSQSAVHSSHPNPPSSVAADAAEYVALDLKTRPMYSDVEITSHSSDPV-EHSRKF 119

Query: 119 NLDVSGPRVLFCADKSVNLLLKSGASQYVEFKSIDASFVGDENGNLWNVPDSRASIFKDK 178
           NLDVSGPRVLFCAD +V+L+LKSGASQY+EFKSIDASFV D +G    VPDSRA+IFKD+
Sbjct: 120 NLDVSGPRVLFCADAAVDLMLKSGASQYLEFKSIDASFVCDADGRFSTVPDSRAAIFKDR 179

Query: 179 SLSLMEKNRLMRFFKLVQGQLAATXXXXXXXXXXXXXXXXXXXXXKISVEDLESPFVEFL 238
           SLSL EKN+LMRFFKL+QG LAA+                     +IS +DLESPFVEFL
Sbjct: 180 SLSLTEKNQLMRFFKLIQGHLAASDEAENDSNA------------RISEDDLESPFVEFL 227

Query: 239 TKMXXXXXXXXXXXYAIAMADYDQDNIGACKGLLKTKDGIDRLATYQSSVGRFTNALGAF 298
            KM           YAIAMADYDQD+I  CK +L TK GIDRLA Y SSVGRF NALGA 
Sbjct: 228 NKMRLPPKIKSMILYAIAMADYDQDSIEVCKDVLDTKIGIDRLALYHSSVGRFPNALGAL 287

Query: 299 IYPIYGQGEMPPAFCRRAAVKGSIYVLRMPVIALLMDKSSGGYKGIRLASGQDIFSQKLV 358
           IYPIYGQGE+  AFCRRAAVKG IYVLRMPVIALLM+K SG  KG+RLASGQDIFSQKL+
Sbjct: 288 IYPIYGQGELTQAFCRRAAVKGCIYVLRMPVIALLMEKESGHCKGVRLASGQDIFSQKLL 347

Query: 359 LDPSLTVPSPSA-SPLDSPHENFQFLCVRDVKQKVARGICIIRSSLKPDIANFLVVYPPR 417
           +DPS  VP P A S  D   E+ Q + + D KQKVARGICI++SSLKPD++NF+ VYPPR
Sbjct: 348 VDPSFIVPVPVAPSQPDCMPESSQVINLVDAKQKVARGICIMKSSLKPDVSNFVFVYPPR 407

Query: 418 SLYPEQMTSIRALQIGGSLAVCPPDTFVLYLSALCDDVHQGKKXXXXXXXXXXTCPDSGQ 477
           SLYPEQ  +IRA+QIG +L VCP   FVLYLS LC+D  QGK+          T P SG 
Sbjct: 408 SLYPEQAMAIRAVQIGSNLGVCPSGMFVLYLSTLCNDATQGKELLQAAIKSLFTLPVSGN 467

Query: 478 PETSSLDQTEN-AVAKPILLWSALYIQELTTVCF 510
           PE SS   +EN    KP LLWSALY QEL    F
Sbjct: 468 PENSSSVHSENMEEVKPTLLWSALYTQELVMGSF 501


>GSVIVT01015656001 assembled CDS
          Length = 445

 Score =  101 bits (251), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 105/415 (25%), Positives = 166/415 (40%), Gaps = 102/415 (24%)

Query: 15  FDLIVVGTGLPESVIAAAASASGKSVLHLDHNHFYGSHFSSLSIPDLXXXXXXXXXXXXX 74
           +D+IV+GTGL E +++   S +G  VLH+D N +YG   SSLS+  L             
Sbjct: 5   YDVIVLGTGLKECILSGLLSVNGFKVLHMDRNEYYGGESSSLSLKQLWQ----------- 53

Query: 75  XXXXXXXANADDFSVVNLAIRPLYSDVEISSFSAQLLQEHSNKFNLDVSGPRVLFCADKS 134
                               R   +D    S  +      S ++N+D+  P+ +      
Sbjct: 54  --------------------RFRGNDQPPESLGS------SREYNVDMI-PKFMMANGGL 86

Query: 135 VNLLLKSGASQYVEFKSIDASFVGDENGNLWNVPDSRASIFKDKSLSLMEKNRLMRFFKL 194
           V +L+ +  ++Y+ FK++D SFV ++ G ++ VP +     K   + L EK R  +FF  
Sbjct: 87  VRVLIHTDVTKYLNFKAVDGSFVYNK-GKIYKVPATDVEALKSPLMGLFEKRRARKFFIY 145

Query: 195 VQGQLAATXXXXXXXXXXXXXXXXXXXXXKISVEDLESPFVEFLTKMXXXXXXXXXXXYA 254
           VQ                           K++  DL S +                    
Sbjct: 146 VQ-----------DYEENDPKSHEGMDLNKVTARDLISKY-------------------- 174

Query: 255 IAMADYDQDNIGACKGLLKTKDGID--------RLATYQSSVGRFTNALGAFIYPIYGQG 306
             + D   D IG    L      +D        R+  Y  S+ RF      +IYP+YG G
Sbjct: 175 -GLEDDTIDFIGHSLALHSDDSYLDEPAMEFVKRMKLYAESLARFQGG-SPYIYPMYGLG 232

Query: 307 EMPPAFCRRAAVKGSIYVLRMPVIALLMDKSSGGYKGIRLASGQDIFSQKLVLDPSLTVP 366
           E+P AF R +AV G  Y+L  P   +  D++   + G+  + G+    +K+V DPS  +P
Sbjct: 233 ELPQAFARLSAVYGGTYMLNKPECKVEFDENGKAF-GV-TSEGETAKCKKVVCDPSY-LP 289

Query: 367 SPSASPLDSPHENFQFLCVRDVKQKVARGICIIRSSL--KPDIANFLVVYPPRSL 419
                             V+ V  KVAR ICI+  S+    D  +  V+ P + L
Sbjct: 290 DK----------------VQKVG-KVARAICIMSHSIPDTNDSHSVQVILPQKQL 327


>GSVIVT01005932001 assembled CDS
          Length = 1862

 Score = 99.0 bits (245), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 98/385 (25%), Positives = 153/385 (39%), Gaps = 84/385 (21%)

Query: 15  FDLIVVGTGLPESVIAAAASASGKSVLHLDHNHFYGSHFSSLSIPDLXXXXXXXXXXXXX 74
           +D+IV+GTGL E +++   S +G  VLH+D N +YG   +SL++  L             
Sbjct: 5   YDVIVLGTGLKECILSGILSVNGLKVLHMDRNDYYGGESTSLNLNQLWKRF--------- 55

Query: 75  XXXXXXXANADDFSVVNLAIRPLYSDVEISSFSAQLLQEHSNKFNLDVSGPRVLFCADKS 134
                     DD    NL                      S  +N+D+  P+ +      
Sbjct: 56  --------RGDDKPPENLG--------------------SSKDYNIDMI-PKFMMANGAL 86

Query: 135 VNLLLKSGASQYVEFKSIDASFVGDENGNLWNVPDSRASIFKDKSLSLMEKNRLMRFFKL 194
           V +L+ +  ++Y+ FK++D SFV ++ G +  VP +     K   + L EK R  +FF  
Sbjct: 87  VRVLIHTNVTKYLNFKAVDGSFVYNK-GKIHKVPATDVEALKSPLMGLFEKRRARKFFIY 145

Query: 195 VQGQLAATXXXXXXXXXXXXXXXXXXXXXKISVEDLESPFVEFLTKMXXXXXXXXXXXYA 254
           VQ                            IS   L+   V+F+                
Sbjct: 146 VQ-----DYDENDPKSHEKMDLRKVTAREVISKYGLDDNTVDFIGH-------------- 186

Query: 255 IAMADYDQDNIGACKGLLKTKDGIDRLATYQSSVGRFTNALGAFIYPIYGQGEMPPAFCR 314
            A+A Y  D       L    D I ++  Y  S+ RF      +IYP+YG GE+P AF R
Sbjct: 187 -ALALYTDDKYLDKPAL----DFIKKMKLYAESLARFQGG-SPYIYPLYGLGELPQAFAR 240

Query: 315 RAAVKGSIYVLRMPVIALLMDKSSGGYKGIRLASGQDIFSQKLVLDPSLTVPSPSASPLD 374
            +AV G  Y+L  P   +  D++   + G+  + G+    +K+V DPS  +P    +   
Sbjct: 241 LSAVYGGTYMLNKPECKVEFDENGKAF-GV-TSEGETAKCKKVVCDPSY-LPDKVGTV-- 295

Query: 375 SPHENFQFLCVRDVKQKVARGICII 399
                           KVAR ICI+
Sbjct: 296 ---------------GKVARAICIM 305


>GSVIVT01038268001 assembled CDS
          Length = 444

 Score = 98.2 bits (243), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 107/444 (24%), Positives = 177/444 (39%), Gaps = 88/444 (19%)

Query: 15  FDLIVVGTGLPESVIAAAASASGKSVLHLDHNHFYGSHFSSLSIPDLXXXXXXXXXXXXX 74
           +D+IV+GTGL E +++   S  G  VLH+D N +YG   SSL++                
Sbjct: 5   YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNL---------------- 48

Query: 75  XXXXXXXANADDFSVVNLAIRPLYSDVEISSFSAQLLQEHSNKFNLDVSGPRVLFCADKS 134
                          + L  R   +D   +S  +      S  +N+D+  P+ +      
Sbjct: 49  ---------------IQLWKRFKGNDKPPASLGS------SRDYNVDMI-PKFMMANGTL 86

Query: 135 VNLLLKSGASQYVEFKSIDASFVGDENGNLWNVPDSRASIFKDKSLSLMEKNRLMRFFKL 194
           V +L+ +  ++Y+ FK++D S+V ++ G +  VP +     K   + L EK R  +FF  
Sbjct: 87  VRVLIHTDVTKYLYFKAVDGSYVFNK-GKVHKVPANDVEALKSPLMGLFEKRRARKFFIF 145

Query: 195 VQGQLAATXXXXXXXXXXXXXXXXXXXXXKISVEDLESPFVEFLTKMXXXXXXXXXXXYA 254
           VQ                           +++         E + K            +A
Sbjct: 146 VQD-----------YDENDPRTHEGMDLTRVTTR-------ELIAKYGLDDNTIDFIGHA 187

Query: 255 IAMADYDQDNIGACKGLLKTKDGIDRLATYQSSVGRFTNALGAFIYPIYGQGEMPPAFCR 314
           IA+   D      C       D + R+  Y  S+ RF      +IYP+YG GE+P AF R
Sbjct: 188 IALHRDD------CYLNEPAIDTVKRMKLYSESIARFQGG-SPYIYPLYGLGELPQAFAR 240

Query: 315 RAAVKGSIYVLRMPVIALLMDKSSGGYKGIRLASGQDIFSQKLVLDPSLTVPSPSASPLD 374
            +AV G  Y+L  P   +  D+  G   G+  + G+    +K+V DPS  +P+       
Sbjct: 241 LSAVYGGTYMLNKPECKVEFDE-EGKAVGV-TSEGETARCKKVVCDPSY-LPNK------ 291

Query: 375 SPHENFQFLCVRDVKQKVARGICIIRSSL--KPDIANFLVVYPPRSLYPEQMTSIRALQI 432
                     VR V  +VAR ICI+   +    D  +  V+ P + L   + + +     
Sbjct: 292 ----------VRKV-GRVARAICIMSHPIPNTSDSHSVQVILPQKQL--GRKSDMYLFCC 338

Query: 433 GGSLAVCPPDTFVLYLSALCDDVH 456
             S  V P   F+ ++S   +  H
Sbjct: 339 SYSHNVAPKGKFIAFVSTEAETDH 362