Jatropha Genome Database

JcCB0123131.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0123131.10 + phase: 0 /partial
         (197 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01026647001 assembled CDS                                       282   6e-77
GSVIVT01025256001 assembled CDS                                       196   6e-51

>GSVIVT01026647001 assembled CDS
          Length = 258

 Score =  282 bits (722), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 137/188 (72%), Positives = 160/188 (85%), Gaps = 21/188 (11%)

Query: 5   LTIFKFFAGLDIVDVLLVNKNGRFTGEAFVVFAGSMQVEFALQRDRQNMGRRYVEVFRCK 64
           + IFKFFAGLDIVDVLLVNK+GRF+GEA+VVFAGSMQ +FALQRDRQNMGRRYVEVFRCK
Sbjct: 72  IDIFKFFAGLDIVDVLLVNKSGRFSGEAYVVFAGSMQADFALQRDRQNMGRRYVEVFRCK 131

Query: 65  RQDYYNAVAAEVNYEGIYDTDYHGSPPPSKAKRFSDKEQLEYTEILKMRGLPFSVKKPEI 124
           +QDYY+AVA+E                     RFSDK+Q+E+TEILK+RGLPFSVKK +I
Sbjct: 132 KQDYYHAVASE---------------------RFSDKDQMEHTEILKLRGLPFSVKKSQI 170

Query: 125 IDFFKEFKLVEERIHIACRPDGKATGEAYVEFVSAEEAKRAMSKDKMTIGSRYVELFPST 184
           ++FF +F+L ++++HIACRPDGKATGEAYVEF SAEEAK+AM KDKMTIGSRYVELFPST
Sbjct: 171 LEFFGDFELGDDKVHIACRPDGKATGEAYVEFASAEEAKKAMGKDKMTIGSRYVELFPST 230

Query: 185 PDEARRAE 192
           PDEARRA+
Sbjct: 231 PDEARRAD 238



 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 43/73 (58%), Gaps = 3/73 (4%)

Query: 109 ILKMRGLPFSVKKPEIIDFFKEFKLVEERIHIACRPDGKATGEAYVEFVSAEEAKRAMSK 168
           ++++RGLPF+    +I  FF    +V+    +     G+ +GEAYV F  + +A  A+ +
Sbjct: 59  VVRLRGLPFNCTDIDIFKFFAGLDIVDV---LLVNKSGRFSGEAYVVFAGSMQADFALQR 115

Query: 169 DKMTIGSRYVELF 181
           D+  +G RYVE+F
Sbjct: 116 DRQNMGRRYVEVF 128


>GSVIVT01025256001 assembled CDS
          Length = 235

 Score =  196 bits (498), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 101/190 (53%), Positives = 130/190 (68%), Gaps = 26/190 (13%)

Query: 7   IFKFFAGLDIVDVLLVNKNGRFTGEAFVVFAGSMQVEFALQRDRQNMGRRYVEVFRCKRQ 66
           + +FF  LDIVDVL V+KNGRFTGEAF V    +QVEFALQR+RQNMGRRYVEVFR KRQ
Sbjct: 72  VAEFFHSLDIVDVLFVHKNGRFTGEAFCVLGYPLQVEFALQRNRQNMGRRYVEVFRSKRQ 131

Query: 67  DYYNAVAAEVNYEGIYDTDYHGSPPPSKAKRFSDKEQLEYTEILKMRGLPFSVKKPEIID 126
           +YY A+A EV       +D  G                    +L++RGLPFS  K +I+D
Sbjct: 132 EYYKAIANEV-------SDTRGG-------------------VLRLRGLPFSASKEDIMD 165

Query: 127 FFKEFKLVEERIHIACRPDGKATGEAYVEFVSAEEAKRAMSKDKMTIGSRYVELFPSTPD 186
           FFK+F L E+ IH+    +G+ TGEA+VEF +AE++K AM+KD+MT+GSRY+ELFPS+ +
Sbjct: 166 FFKDFVLSEDSIHMTVNSEGRPTGEAFVEFTNAEDSKAAMAKDRMTLGSRYIELFPSSLE 225

Query: 187 EARRAESRSR 196
           E   A +R R
Sbjct: 226 ELDEAVARGR 235



 Score = 47.0 bits (110), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 28/106 (26%), Positives = 51/106 (48%), Gaps = 17/106 (16%)

Query: 86  YHGSPPPSKAKRFSDKEQLEYTEILKMRGLPFSVKKPEIIDFFKEFKLVEERIHIACRPD 145
           Y G PPP                ++++RGLPF   + ++ +FF    +V+    +    +
Sbjct: 48  YIGQPPP--------------FPVVRLRGLPFDCSEADVAEFFHSLDIVDV---LFVHKN 90

Query: 146 GKATGEAYVEFVSAEEAKRAMSKDKMTIGSRYVELFPSTPDEARRA 191
           G+ TGEA+       + + A+ +++  +G RYVE+F S   E  +A
Sbjct: 91  GRFTGEAFCVLGYPLQVEFALQRNRQNMGRRYVEVFRSKRQEYYKA 136