Jatropha Genome Database

JcCB0122531.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0122531.10 + phase: 0 
         (617 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01007978001 assembled CDS                                       441   e-124
GSVIVT01003228001 assembled CDS                                       281   9e-76

>GSVIVT01007978001 assembled CDS
          Length = 524

 Score =  441 bits (1133), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 219/467 (46%), Positives = 289/467 (61%), Gaps = 55/467 (11%)

Query: 150 KFLQGLYSPELDERSCLSRYQSILYRKPSTHNPSPYLLSKLLEYEDLHKLCGPYTKAYSK 209
           K L GL     +ERSCLSRYQS LYRK   H PS YLLSKL  YE LHK CGPYT++Y++
Sbjct: 97  KLLGGLLDAGFNERSCLSRYQSALYRKELLHKPSSYLLSKLRSYEALHKRCGPYTESYNR 156

Query: 210 ASKRLKSGTRSTSSKCKYIIWVPANGLGNRIVSMAATFLYALLTNRVLLVDHGTDMADLF 269
             K+L+ G     S C Y++W+  +GLGNRI+++A+ FLYA+LTNRVLLVD G DM DLF
Sbjct: 157 TLKQLQLGQHMEQSDCNYLVWISFSGLGNRILTLASAFLYAILTNRVLLVDPGADMPDLF 216

Query: 270 CEPFPNTSWLLPNSFPLKQQFGVTKIRHAHGFGSIAVNMSIKSQ-----PTHLYLNLDHS 324
           CEPFP  SWLLP  FPLK +F     +    +G +  N ++        P ++YL+L H 
Sbjct: 217 CEPFPEVSWLLPLDFPLKNEFNSFDQKSPFCYGKMLKNKTLTDSSWSILPPYVYLHLVH- 275

Query: 325 DYDLDKKLFYCDKGESLLVKVTWLILLSDQYFAPSFFLSSSYKEEVSKLFPEKDTIFFHL 384
           DYD   K+F+C++ +S L K+  LI+ +D YF PS FL  S+++E+              
Sbjct: 276 DYDDHDKMFFCNQDQSFLRKIPCLIIKTDNYFVPSLFLIPSFEQEL-------------- 321

Query: 385 SHYLFSPSNQAWGLITRFYDAYLAKADKRAGLQVRVFQAQTTTFQIVMNQILACTMNEKI 444
                                              +F      FQ V++QI+ACTM E +
Sbjct: 322 -----------------------------------IFDTGIGPFQHVLDQIIACTMTENL 346

Query: 445 LPETQTEESVDSEFRNKTSEAILVTSLHSEFYENLKDMYWTRSTVTGEVVGVYQASHEDY 504
           LPE    E V S + +K S+A+L+TSL + ++E +++MYW   TVTGEV+GVYQ SHE+Y
Sbjct: 347 LPEINMREPVVSSYGHKKSKAVLMTSLSAGYFEKVRNMYWEHPTVTGEVIGVYQPSHEEY 406

Query: 505 QHFGDNKHNMKAWVEMYLLSMSDVLVTSGFSTFGYVAQGLGGLRPWILYKTNGKKIRNPP 564
           Q      HN KAW EMYLLS++DVLVTS +STFGYVAQGLGGL+PWILYK   +   +PP
Sbjct: 407 QQTEKQNHNRKAWAEMYLLSLTDVLVTSSWSTFGYVAQGLGGLKPWILYKPENQTAPDPP 466

Query: 565 CVRDISMEPCFHVPKIDNCQDKVKIDAGALLPYLRHCQDRKEGVKLV 611
           C R +SMEPCFH P   +C+ K  +D GAL+P++RHC+D   G+KLV
Sbjct: 467 CRRAMSMEPCFHAPPFYDCKAKKGVDTGALVPHVRHCEDMSWGLKLV 513


>GSVIVT01003228001 assembled CDS
          Length = 474

 Score =  281 bits (718), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 148/267 (55%), Positives = 183/267 (68%), Gaps = 6/267 (2%)

Query: 139 SSQPNKLTSDFKFLQGLYSPELDERSCLSRYQSILYRKPSTHNPSPYLLSKLLEYEDLHK 198
           SSQP  ++ D   L GL +    E+SCLSRYQS LYRK S + PS YLLS+L +YEDLHK
Sbjct: 73  SSQPADMSKD-SLLGGLLAAGFGEKSCLSRYQSALYRKISPYKPSSYLLSRLRKYEDLHK 131

Query: 199 LCGPYTKAYSKASKRLKSGTRSTSSKCKYIIWVPANGLGNRIVSMAATFLYALLTNRVLL 258
            CGP+TK+Y K  K LKSG     + C Y++W+  +GLGNRI+++A+ FLYALLTNRVLL
Sbjct: 132 HCGPHTKSYRKTIKLLKSGHSVGPTDCNYVVWISYSGLGNRILTLASAFLYALLTNRVLL 191

Query: 259 VDHGTDMADLFCEPFPNTSWLLPNSFPLKQQFGVTKIRHAHGFGSI----AVNMSIKSQP 314
           VD G DMADLFCEPFP  SWLLP  FPL  +F        H FG +     +N S +  P
Sbjct: 192 VDRGKDMADLFCEPFPEKSWLLPLDFPLLPKFNSINKESPHCFGKMLKNNIINSSTEQPP 251

Query: 315 THLYLNLDHSDYDLDKKLFYCDKGESLLVKVTWLILLSDQYFAPSFFLSSSYKEEVSKLF 374
             LY+ L H DY    KLF+CD+ ++LL KV WLI+ ++ YF PS FL  S+++E+SKLF
Sbjct: 252 PFLYIYLSH-DYGDHDKLFFCDQEQTLLGKVPWLIMKTNNYFVPSLFLMPSFEQELSKLF 310

Query: 375 PEKDTIFFHLSHYLFSPSNQAWGLITR 401
           PEK+T F HL  YLF PSNQ WGLITR
Sbjct: 311 PEKETTFHHLGRYLFHPSNQVWGLITR 337



 Score =  175 bits (443), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 74/132 (56%), Positives = 96/132 (72%)

Query: 480 KDMYWTRSTVTGEVVGVYQASHEDYQHFGDNKHNMKAWVEMYLLSMSDVLVTSGFSTFGY 539
           ++MYW +S ++GEVV VYQ SHE+ Q      HN KAW EMYLLS ++ L+TS +STFGY
Sbjct: 337 RNMYWEQSAMSGEVVSVYQPSHEEVQQSEKQGHNRKAWAEMYLLSTTEALITSAWSTFGY 396

Query: 540 VAQGLGGLRPWILYKTNGKKIRNPPCVRDISMEPCFHVPKIDNCQDKVKIDAGALLPYLR 599
           VAQGLGG+ PWILYK   +   +PPC R +SMEPCFH P   +C+ K  +D GAL+P++R
Sbjct: 397 VAQGLGGVTPWILYKPQNRTAPDPPCGRAMSMEPCFHAPPFYDCKAKTGVDTGALVPHVR 456

Query: 600 HCQDRKEGVKLV 611
           HC+D   G+KLV
Sbjct: 457 HCEDMSWGLKLV 468