Jatropha Genome Database

JcCB0122521.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0122521.10 - phase: 0 
         (519 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01019998001 assembled CDS                                       234   6e-62
GSVIVT01008021001 assembled CDS                                       147   9e-36
GSVIVT01029894001 assembled CDS                                        74   1e-13

>GSVIVT01019998001 assembled CDS
          Length = 377

 Score =  234 bits (598), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 157/367 (42%), Positives = 196/367 (53%), Gaps = 77/367 (20%)

Query: 33  YLSNAEETFVDELAESNKKLIGQALEGIHFSSSGRKKVAEDGEIGVFSAEKYFNGVIDED 92
           Y++  +E FV +LAESN  L             GRKK AEDGEIGVF AEKYFNG +DE 
Sbjct: 26  YVNGTDEPFVLKLAESNGSLSTITTSPQERLYLGRKK-AEDGEIGVFGAEKYFNGGMDEG 84

Query: 93  SPRITKIIPRKYQQPKKEEISNDHIVPAKPAVNIQPATPKVNIQPATPSVVSESSRHSQT 152
            P I   I    + P+                N    T + N       + SESS  SQ+
Sbjct: 85  KPSIANKIRGMNETPR--------------LANKNGGTNEENF------MRSESSWDSQS 124

Query: 153 ALLHNFVQRKTSSRKANKSGRNFLAGLGCKCYCSDKDSIDVDDEHVGEISFKKSPNPAAL 212
           ALL + ++    ++     G++ LA L CKC CSDK+S++ D E+VGE    K       
Sbjct: 125 ALLTSVLRNPPRNKTKMTPGKSLLASLCCKCSCSDKNSVETD-EYVGENRSNK------- 176

Query: 213 FQGKSVITKPVIKTSLDELDQTSLSDEIHSKNGIKKDTCXXXXXXXXXXXXXXXVRFQIQ 272
              ++  T PV K+    L                                   V+ Q+ 
Sbjct: 177 ---ENCFTLPVAKSGAGNL----------------------------------AVKLQLG 199

Query: 273 EKQVLKPRKSLEVFGSPVNDDKRSKSFRIERRLSMLSWDTTKNPKMEEIDYSATSGGGIY 332
           E +  KPRKSLE+FGSP+   K  KS  +ERRL+MLSW+ T  P++EE         GI 
Sbjct: 200 EGEGRKPRKSLEIFGSPI-LQKGHKSLSLERRLTMLSWEAT--PRVEEP--------GIN 248

Query: 333 NDNESDASSDLFEIESLSGKVTPYLARQKSDVTSGCVTPTTCYAPSEASIEWSVVTASAA 392
           ND ESDASSDLFEIESLS +V P+LARQ+SD  SGC+TPTTCYAPSEASIEWSVVTAS A
Sbjct: 249 NDTESDASSDLFEIESLSSRVAPFLARQESDGMSGCITPTTCYAPSEASIEWSVVTASVA 308

Query: 393 DFSAMSD 399
           D+S MSD
Sbjct: 309 DYSVMSD 315


>GSVIVT01008021001 assembled CDS
          Length = 411

 Score =  147 bits (372), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 101/231 (43%), Positives = 129/231 (55%), Gaps = 27/231 (11%)

Query: 267 VRFQIQEKQVLKPRKSLEVFGSPVNDDKRSKSFRIERRLSMLSWDTTKNPKMEEIDYSAT 326
            R  I ++   + RKSLEVFGS +   K   +  +ER+LS+L+WD    PK++ +  + +
Sbjct: 179 TRVSIDKRAEEEGRKSLEVFGSHMLK-KGDVATNLERKLSVLTWDAI--PKVQTVP-TTS 234

Query: 327 SGGGIYNDNESDASSDLFEIESLSGKVTPYLARQKSDVTSGCVTPTTCYAPSEASIEWSV 386
            G GIY DNESDASSDLFEIE+LSG   P   RQ SD  S C    T Y PSEASIEWSV
Sbjct: 235 EGTGIYEDNESDASSDLFEIENLSGSAHPLFNRQASDGMSSC----TRYEPSEASIEWSV 290

Query: 387 VTASAADFSAMSDYEEFRPPPGPLSPIKTFAINNNLN-----TRFLSSKEII----PTCR 437
           VTASAADFS  SD++E +        +++   +  +N     TR   +K  +       R
Sbjct: 291 VTASAADFSVTSDFDEKK-------QVESTENSREMNFASTPTRPSKTKSSVGKEAQRSR 343

Query: 438 PGIFLGCNSHKAVRVAGDGYTPNDKTNFDPRVMH---SYMPVAKCPAETKL 485
           P   LGC S KAVRV+   Y  NDK   DP   H   S MP+ K   E K+
Sbjct: 344 PTGLLGCRSDKAVRVSEPAYRTNDKVKSDPGWHHRLDSSMPLGKSQGENKV 394



 Score = 82.4 bits (202), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 56/165 (33%), Positives = 83/165 (50%), Gaps = 17/165 (10%)

Query: 33  YLSNAEETFVDELAESNKKL---IGQALEGIHFSSSGRKKVAEDGEIGVFSAEKYFNGVI 89
           YLS AEE F  +LAES +     +    E  +  + GR    E+GE+ VF AEKYFN  +
Sbjct: 18  YLSTAEENFAVKLAESIQSPYLPLTSTQEAAYPVNLGRTMSVEEGELRVFGAEKYFNMKM 77

Query: 90  DEDSPRITKIIPRKYQQPKKEEISNDHIVPAKPAVNIQPATPKVNIQPATPSVVSESSRH 149
           D+   R+T      ++Q K++              ++    PK  I+P TPS  SE+S +
Sbjct: 78  DDGRRRLTTSSSLTHRQIKEDR------------ADLHCTKPK--IRPGTPSASSEASWN 123

Query: 150 SQTALLHNFVQRKTSSRKANKSGRNFLAGLGCKCYCSDKDSIDVD 194
           S  ALL   ++  + S++   + +   AG GC   CSDK S+ VD
Sbjct: 124 SHAALLPRLLRNPSPSKQRKANAKMIFAGFGCNGSCSDKKSVYVD 168


>GSVIVT01029894001 assembled CDS
          Length = 433

 Score = 74.3 bits (181), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 98/342 (28%), Positives = 134/342 (39%), Gaps = 76/342 (22%)

Query: 70  VAEDGEIGVFSAEKYFNGVIDEDSPRITKIIPRKYQQPKKEEISNDHIVPAKPAVNIQPA 129
           +AED EI +F A+KYFN   +       ++ P   +  +     + H             
Sbjct: 54  IAEDSEISIFDAQKYFNESSEHQQRESKRVAPVGAEHCENYRARSFH------------- 100

Query: 130 TPKVNIQPATPSVVSESSRHSQTALLHN------FVQRKTSSRKANKSGRNFLAGLGCKC 183
                   ATP+  SE+S +SQT LL N         R   S K N SGR +    G KC
Sbjct: 101 --------ATPTASSEASWNSQTGLLCNPPGTIGVSVRSIGSEKKNVSGRKWF--FGRKC 150

Query: 184 YCSDKDSIDVDDEHVGEISFKKSPN-PAALFQGKSVITKPVIKTSLDELDQTSLSDEIHS 242
            CS K ++        EI  K  P  P A     + + + V+ +       T  S  I S
Sbjct: 151 PCSGKKAV--------EIQEKVPPKFPPATHLPSNQLARRVLASG------TGFSFPILS 196

Query: 243 KNGIKKDTCXXXXXXXXXXXXXXXVRFQIQEKQVLKPRKSLEVFGSPVNDDKRSKSFRIE 302
           +    K                   R  I  +    PR SLE+F    +   R  +  I 
Sbjct: 197 QAPPVK-------------LVFTSARNPIPLED--PPRDSLEIFRPSDDCISRKSTDSIA 241

Query: 303 RRLSMLSWDTTKNPKMEE---IDYSATS---GGGIYNDNESDASSDLFEIESLSGKVTPY 356
            R+         NP   E     +SA+    G  + +D  SDASSDLFEIES + + T  
Sbjct: 242 PRI------FASNPAAAERRSFTFSASPKSRGTAMDDDVASDASSDLFEIESFTTQTTTT 295

Query: 357 LARQKS-----DVTSGCVTPTTCYAPSEASIEWSVVTASAAD 393
                +     +  +  V PT CY PSEASI+WSV TA   D
Sbjct: 296 TTTATNYPILDEPATPSVAPTECYEPSEASIDWSVTTAEGFD 337