Jatropha Genome Database

JcCB0121711.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0121711.20 - phase: 0 /pseudo/partial
         (216 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01014069001 assembled CDS                                       298   9e-82
GSVIVT01032685001 assembled CDS                                        64   5e-11
GSVIVT01032619001 assembled CDS                                        56   1e-08
GSVIVT01035482001 assembled CDS                                        55   3e-08

>GSVIVT01014069001 assembled CDS
          Length = 283

 Score =  298 bits (764), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 144/205 (70%), Positives = 168/205 (81%)

Query: 12  YTEEPATNVRFQTXXXXXXXXXXXXXXGTGYREKVFAIIGVKVYAAGLYVNPSILSALDT 71
           Y EEP+TNV+FQT              GTGYREKVFAIIGVKVYAAGLY+N SI + L+ 
Sbjct: 79  YIEEPSTNVKFQTSLTLPECSSPLSLLGTGYREKVFAIIGVKVYAAGLYLNQSISNKLNA 138

Query: 72  WKGQSTAEIHGNAAFFSSIFQAALEKSLQIVLVRDVDGKTFWDALDDAISPRIKAPTLVD 131
           WKG+S  EI G+++ F SIFQ   EKSLQIVLVRDVDGKTFWDALD+AISPRIKAP+ VD
Sbjct: 139 WKGRSATEIQGDSSLFDSIFQIPQEKSLQIVLVRDVDGKTFWDALDEAISPRIKAPSPVD 198

Query: 132 ESALSAFRSVFQDRALKKGTFIFLTWLDPSKLLICVSSDGIPSSVDATIESANVASALFD 191
            SALS FRS+FQ R+L+KGTFIFLTW++PSK+L+C+SSDG+PSSVDATI+S NV  ALFD
Sbjct: 199 VSALSTFRSIFQGRSLRKGTFIFLTWMEPSKMLVCISSDGLPSSVDATIKSMNVTMALFD 258

Query: 192 VFFGDASVSPSLKASVTTGLATILK 216
           VFFG++ VSPSLKASV  GLAT+LK
Sbjct: 259 VFFGNSPVSPSLKASVANGLATVLK 283


>GSVIVT01032685001 assembled CDS
          Length = 218

 Score = 63.9 bits (154), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 53/182 (29%), Positives = 88/182 (48%), Gaps = 6/182 (3%)

Query: 39  GTGYREKVFAIIGVKVYAAGLYVNPSILSALDTWKGQSTAEIHGNAAFFSSIFQAALEKS 98
           G G  +     + +K  A G+Y+ P I+  L  WKG+S  E+  N  FF ++  A  EK 
Sbjct: 36  GYGITDIEIHFLQIKFTAIGVYLEPEIVGHLQPWKGKSGKELAENDDFFEALISAPGEKF 95

Query: 99  LQIVLVRDVDGKTFWDALDDAISPRIKAP---TLVDESALSAFRSVFQDRALKKGTFIFL 155
           L+IV+++++ G  +   L+ A+  R+ A       +E AL      FQ +  KK + I  
Sbjct: 96  LRIVVIKEIKGSQYGVQLESAVRDRLAADDKYEEEEEEALEKVVEFFQSKYFKKDSIITF 155

Query: 156 TWLDPS-KLLICVSSDGIPSSVDATIESANVASALFDVFFGDA-SVSPSLKASVTTGLAT 213
            +   S    I  +++G   S   T+E+ANV   +   + G    VSP+  +++   LAT
Sbjct: 156 HFPATSCTAEIVFATEGKEES-KITVENANVVEMIKKWYLGGTRGVSPTTISALANTLAT 214

Query: 214 IL 215
            L
Sbjct: 215 EL 216


>GSVIVT01032619001 assembled CDS
          Length = 234

 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/169 (24%), Positives = 72/169 (42%), Gaps = 5/169 (2%)

Query: 52  VKVYAAGLYVNPSILSALDT-WKGQSTAEIHGNAAFFSSIFQAALEKSLQIVLVRDVDGK 110
           VK  A G+Y+  S +  L   WKG++  E+  +  FF  +     EK  ++  +  + G+
Sbjct: 47  VKFTAIGVYLESSAVPTLAVKWKGKTVEELADSVDFFRDVVTGPFEKFTKVTTILPLTGR 106

Query: 111 TFWDALDD---AISPRIKAPTLVDESALSAFRSVFQDRALKKGTFIFLTWLDPSKLLICV 167
            + D + +   A    +   T  +  A+  F  V +D     G  I  T      L +  
Sbjct: 107 QYSDKVSENCVAFWKSVGIYTDAEAKAIEKFNEVLKDETFPPGNSILFTHSPLGALTMSF 166

Query: 168 SSDG-IPSSVDATIESANVASALFDVFFGDASVSPSLKASVTTGLATIL 215
           S DG +P   +A IE+  +  A+ +   G   VSP  K S+   L+ + 
Sbjct: 167 SKDGSLPEVGNAVIENKLLTEAVLESIIGKHGVSPEAKKSLAARLSELF 215


>GSVIVT01035482001 assembled CDS
          Length = 422

 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 48/184 (26%), Positives = 82/184 (44%), Gaps = 11/184 (5%)

Query: 39  GTGYRE-KVFAIIGVKVYAAGLYVNPSILSALDTWKGQSTA--EIHGNAAFFSSIFQAAL 95
           GTG R  K+  I  +KVYA G YV+P ++      K  S    E++    F+  + +  +
Sbjct: 242 GTGSRTMKIIKIKSLKVYAFGFYVHPLLICEKLGPKYASIPVDELNKRQDFYEDLLREDI 301

Query: 96  EKSLQIVL-VRDVDGKTFWDALDDAISPRI-KAPTLVDESALSAFRSVF-QDRALKKGTF 152
             ++++V+    +   T  DA + ++  R+ K     D   L+ F S F QD  L  GT 
Sbjct: 302 NMTVRLVVNCNGMKINTVRDAFEKSLRNRLLKTNPDTDYQCLTTFGSYFTQDIPLPAGTT 361

Query: 153 IFLTWLDPSKLLICVSSDGIPSSVDATIESANVASALFDVFFGDASVSPSLKASVTTGLA 212
           I        +L+  +    I       + S ++  A FD++ GD  VS   K  +   +A
Sbjct: 362 IDFRRTADGQLITEIGGRTI-----GVVHSKDLCRAFFDMYIGDVPVSHQTKEEIGRNVA 416

Query: 213 TILK 216
            I++
Sbjct: 417 NIIR 420