Jatropha Genome Database

JcCB0121691.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0121691.10 + phase: 2 /pseudo
         (489 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01032470001 assembled CDS                                       840   0.0  
GSVIVT01018976001 assembled CDS                                       218   6e-57

>GSVIVT01032470001 assembled CDS
          Length = 618

 Score =  840 bits (2171), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 412/468 (88%), Positives = 436/468 (93%), Gaps = 3/468 (0%)

Query: 9   SRSHGVSKILQIQKCNCSQFTIGEHWRSLRMRPVSVSSCLRDGSTRYFDFVVIGSGVAGL 68
           S S  VSK+LQIQ+ N  Q +I ++W+ LR   VS +S L+DGS +YFDF VIGSGVAGL
Sbjct: 44  SGSSWVSKVLQIQRRNFRQSSINDNWKPLR--AVS-ASYLKDGSVKYFDFAVIGSGVAGL 100

Query: 69  RYALEVAKHGTVAVITKAEPHESNTNYAQGGVSAVLCPLDSVESHMQDTIVAGANLCDEE 128
           RYALEVAKHG+VAVITKAEPHESNTNYAQGGVSAVLCPLDSVESHM+DTI+AGA LCDEE
Sbjct: 101 RYALEVAKHGSVAVITKAEPHESNTNYAQGGVSAVLCPLDSVESHMRDTIIAGAYLCDEE 160

Query: 129 TVRVVCTEGPDRIRELIAMGAMFDHGEDGNLHLAREGGHSHHRIVHAADMTGREIERALL 188
           TVRVVCTEGPDRIRELIAMGA FDHGEDGNLHLAREGGHSHHRIVHAADMTGREIERALL
Sbjct: 161 TVRVVCTEGPDRIRELIAMGASFDHGEDGNLHLAREGGHSHHRIVHAADMTGREIERALL 220

Query: 189 EAVVNDPKISMFEHHFAIDLLTSQDGLNTVCHGVDTINTESKEVVRFISKVTLLAAGGAG 248
           EAVVNDP I MFEHHFAIDLLTSQDG +TVCHGVDT+NTE++EVVRFI+KV LLA+GGAG
Sbjct: 221 EAVVNDPNIFMFEHHFAIDLLTSQDGSDTVCHGVDTLNTETQEVVRFIAKVILLASGGAG 280

Query: 249 HIYPSTTNPLVATGDGIAMAHRAQAVISNMEFVQFHPTALADEGLPIKPNKTRENAFLIT 308
           HIYP+TTNPLVATGDGIAMAHRAQAVISNMEFVQFHPTALADEGLPI P KTRENAFLIT
Sbjct: 281 HIYPTTTNPLVATGDGIAMAHRAQAVISNMEFVQFHPTALADEGLPITPAKTRENAFLIT 340

Query: 309 EAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSIDDQLKKRNEKYVLLDISHRPRG 368
           EAVRGDGGILYNL MERFMPLYDERAELAPRDVVARSIDDQLKKRNEKYVLLDISH+P+ 
Sbjct: 341 EAVRGDGGILYNLSMERFMPLYDERAELAPRDVVARSIDDQLKKRNEKYVLLDISHKPKE 400

Query: 369 KILSHFPNIAAECLKYGLDITHQPIPVVPAAHYMCGGVRAGLQGETNVRGLYVAGEVACT 428
           KILSHFPNIAAECLKYGLDIT QPIPVVPAAHYMCGGVRAGLQGETNVRGLYVAGEVACT
Sbjct: 401 KILSHFPNIAAECLKYGLDITRQPIPVVPAAHYMCGGVRAGLQGETNVRGLYVAGEVACT 460

Query: 429 GLHGANRLASNSLLEALVFARRAVQPSIDHMKSSRLNLSASDCWARPV 476
           GLHGANRLASNSLLEALVFARRAVQPSIDHM +S L+LSAS+C  R V
Sbjct: 461 GLHGANRLASNSLLEALVFARRAVQPSIDHMSNSTLDLSASNCGTRKV 508


>GSVIVT01018976001 assembled CDS
          Length = 670

 Score =  218 bits (554), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 148/404 (36%), Positives = 203/404 (50%), Gaps = 44/404 (10%)

Query: 74  VAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPL--DSVESHMQDTIVAGANLCDEETV 130
           +++HG   A ITK  P  S+T  AQGG++A L  +  D    HM DT+     L D++ +
Sbjct: 104 LSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAI 163

Query: 131 RVVCTEGPDRIRELIAMGAMFDHGEDGNLHLAREGGHS--------HHRIVHAADMTGRE 182
           + +C E P  + EL   G  F   EDG ++    GG S         +R   AAD TG  
Sbjct: 164 QYMCREAPKAVIELENYGLPFSRTEDGRIYQRAFGGQSLNFGKGGQAYRCACAADRTGHA 223

Query: 183 IERALLEAVVNDPKISMFEHHFAIDLLTSQDGLNTVCHGVDTINTESKEVVRFISKVTLL 242
           +   L    +       F  +FA+DLL   DG    C GV  +N E   + RF +  T+L
Sbjct: 224 LLHTLYGQAMKH-NTQFFVEYFALDLLMDNDG---ACQGVIALNMEDGTLHRFQAASTIL 279

Query: 243 AAGGAGHIYPSTTNPLVATGDGIAMAHRAQAVISNMEFVQFHPTALADEGLPIKPNKTRE 302
           A GG G  Y S T+    TGDG AM  RA   + ++EFVQFHPT +   G          
Sbjct: 280 ATGGYGRTYFSATSAHTCTGDGNAMVARAGLPLQDLEFVQFHPTGIYGAGC--------- 330

Query: 303 NAFLITEAVRGDGGILYNLGMERFMPLYDERA-ELAPRDVVARSIDDQLKKRN-----EK 356
              LITE  RG+GGIL N   ERFM  Y   A +LA RDVV+RS+  ++++       + 
Sbjct: 331 ---LITEGSRGEGGILRNSEGERFMERYAPTAKDLASRDVVSRSMTMEIREGRGVGPLKD 387

Query: 357 YVLLDISHRPRGKILSHFPNIAAECLKY-GLDITHQPIPVVPAAHYMCGGVRAGLQGE-- 413
           ++ L ++H P   +    P I+     + G+D+T +PIPV+P  HY  GG+     GE  
Sbjct: 388 HIYLHLNHLPPEVLKERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNYHGEVL 447

Query: 414 --------TNVRGLYVAGEVACTGLHGANRLASNSLLEALVFAR 449
                     V GL  AGE AC  +HGANRL +NSLL+ +VF R
Sbjct: 448 TIKGNDPDAVVPGLMAAGEAACASVHGANRLGANSLLDIVVFGR 491