Jatropha Genome Database

JcCB0121431.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0121431.10 + phase: 0 
         (188 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01016541001 assembled CDS                                       129   9e-31
GSVIVT01016540001 assembled CDS                                        99   1e-21
GSVIVT01007763001 assembled CDS                                        48   3e-06

>GSVIVT01016541001 assembled CDS
          Length = 170

 Score =  129 bits (323), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 76/186 (40%), Positives = 113/186 (60%), Gaps = 18/186 (9%)

Query: 1   MSEPEISKALPITTLILRVFAMLLLLTSVIILATDSATFKALLSSQEVTMRLKYIYSYRY 60
           M+EP  S   P+ +L+LR+   + +L S+ IL T+SAT   +++S E+ +R K +++YRY
Sbjct: 1   MTEPSSSTPSPVISLVLRLLTFISILISLTILTTNSATI--VVNSTELKLRFKDVHAYRY 58

Query: 61  MLSAAVIGIAYTFFQLPFAIYHISTGKRLIKNVAA-IYFDFFSDKVILCFLASGVGAGFG 119
           ML A V+G+ Y   Q+ F IYH+S GKR+  +  + + FDF++DKV+   LA+G GA FG
Sbjct: 59  MLFALVVGLPYILLQIVFGIYHVSMGKRISSSGESLLQFDFYADKVMSYILATGTGAAFG 118

Query: 120 ATYDLKENLDQLDDIFKKLGSNLLSEFRTQMDDFFTMGYVSATLLLLGFLCFGVSSLLSF 179
           AT DLKE       +F +LGSN         + FF  G  +A+ +L  FL   VSS+ S 
Sbjct: 119 ATLDLKE-------VFSELGSN--------YNKFFNKGSAAASFILFAFLFTAVSSVFSS 163

Query: 180 LTLFKR 185
           L L K+
Sbjct: 164 LALPKK 169


>GSVIVT01016540001 assembled CDS
          Length = 160

 Score = 99.0 bits (245), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 56/129 (43%), Positives = 75/129 (58%), Gaps = 6/129 (4%)

Query: 11  PITTLILRVFAMLLLLTSVIILATDSATFKALLSSQ--EVTMRLKYIYSYRYMLSAAVIG 68
           P+  L+LR+  ++ +  S I+L T++ T    LSS   +V +  K +YSYRYM+   V+G
Sbjct: 6   PVAALVLRILTLISISISFIVLITNTTT----LSSDYGKVKLHFKDVYSYRYMVFTLVVG 61

Query: 69  IAYTFFQLPFAIYHISTGKRLIKNVAAIYFDFFSDKVILCFLASGVGAGFGATYDLKENL 128
            AYT  Q+ F IY +  GKRL        FDF+ DKVI   LA+GVGA FGAT DLKE  
Sbjct: 62  FAYTLLQIAFTIYQVCMGKRLSSGDGLYQFDFYGDKVISYVLATGVGAAFGATIDLKEAS 121

Query: 129 DQLDDIFKK 137
              +  F K
Sbjct: 122 SGANKFFNK 130


>GSVIVT01007763001 assembled CDS
          Length = 130

 Score = 47.8 bits (112), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/128 (30%), Positives = 54/128 (42%), Gaps = 20/128 (15%)

Query: 58  YRYMLSAAVIGIAYTFFQLPFAIYHISTGKRLIKNVAAIYFDFFSDKVILCFLASGVGAG 117
           YRY LS  VI   Y+ FQ     YH+ T K +  N +  + +FF D+V+   L S   + 
Sbjct: 20  YRYCLSMTVIAFVYSGFQACDLAYHLVTQKHMFSNHSRYHLNFFMDQVLAYLLMSASSS- 78

Query: 118 FGATYDLKENLDQLDDIFKKLGSNLLSEFRTQMDDFFTMGYVSATLLLLGFLCFGVSSLL 177
             AT        ++DD     G           D+F  M   S  +  L F+ F  SSL+
Sbjct: 79  -AAT--------RVDDWQSNWGK----------DEFTEMASASIGMSFLAFVAFAFSSLI 119

Query: 178 SFLTLFKR 185
           S   L  R
Sbjct: 120 SGYNLCNR 127