Jatropha Genome Database

JcCB0121101.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0121101.10 + phase: 0 /partial
         (378 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01016971001 assembled CDS                                       552   e-158
GSVIVT01015297001 assembled CDS                                       550   e-157
GSVIVT01031551001 assembled CDS                                       410   e-115
GSVIVT01009899001 assembled CDS                                       395   e-110
GSVIVT01002667001 assembled CDS                                       363   e-101
GSVIVT01006129001 assembled CDS                                       132   2e-31
GSVIVT01034893001 assembled CDS                                        73   2e-13

>GSVIVT01016971001 assembled CDS
          Length = 448

 Score =  552 bits (1423), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 259/316 (81%), Positives = 287/316 (90%)

Query: 63  MVVEMHAGLASEGGSKLKMLISYVDNLPTGDENGLFYALDLGGTNFRVLRVHLGGKDGRL 122
           M VEMHAGLASEGGSKLKMLISYVDNLPTGDE GLFYALDLGGTNFRVLRV LGG+DGR+
Sbjct: 1   MTVEMHAGLASEGGSKLKMLISYVDNLPTGDEKGLFYALDLGGTNFRVLRVQLGGRDGRI 60

Query: 123 VNQEFAEVPIPPNLMTGTSDALFDYIAAELAKFVAQEDEKFQLPPGKKRELGFTFSFPVT 182
           VNQEF EV IPPNLM  ++DALFDYIA ELAKFVA+E   F LPPG++RELGFTFSFPV 
Sbjct: 61  VNQEFVEVSIPPNLMVKSTDALFDYIATELAKFVAKEGPGFHLPPGRQRELGFTFSFPVM 120

Query: 183 QTSIASGNLVRWTKGFSIDDAVGQDVVVALTKAMERKGVHMHVSALVNDTVGTLAGGKYF 242
           QTSI SGNL++WTKGFSIDD +G+DVV  LTKA+ERKGV M VSALVNDT+GTLAGG+YF
Sbjct: 121 QTSINSGNLIKWTKGFSIDDTIGRDVVAELTKAIERKGVDMRVSALVNDTIGTLAGGRYF 180

Query: 243 NKDVVAAVILGTGTNAAYVERAQAIPKWHGALPESGEMVINMEWGNFRSSHLPLTKYDLA 302
           N DVV AVILGTG+NAAYVERAQAIPKW G LP+SG+MVINMEWGNFRSSHLPLT+YD A
Sbjct: 181 NDDVVVAVILGTGSNAAYVERAQAIPKWQGLLPKSGDMVINMEWGNFRSSHLPLTEYDRA 240

Query: 303 LDAESLNPGEQIFEKIISGMYLGEIVRRVLLRMAEEASFFGDAVPPKLRVPFILRTPDMS 362
           +D +SLNPGEQIFEK++SGMYLGEI+RRVLLRMAEEA+FFG  VPPKL++PFILRTPDMS
Sbjct: 241 MDIDSLNPGEQIFEKLVSGMYLGEILRRVLLRMAEEAAFFGATVPPKLKIPFILRTPDMS 300

Query: 363 AMHHDTSSDLKVVGNK 378
           +MHHDTS +LKVVG K
Sbjct: 301 SMHHDTSVNLKVVGIK 316


>GSVIVT01015297001 assembled CDS
          Length = 436

 Score =  550 bits (1416), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 259/316 (81%), Positives = 287/316 (90%)

Query: 63  MVVEMHAGLASEGGSKLKMLISYVDNLPTGDENGLFYALDLGGTNFRVLRVHLGGKDGRL 122
           M VEMHAGLASEGGSKLKM+ISYVDNLPTGDE GLFYALDLGGTNFRVLRV LGGKD R+
Sbjct: 1   MTVEMHAGLASEGGSKLKMIISYVDNLPTGDEKGLFYALDLGGTNFRVLRVQLGGKDKRV 60

Query: 123 VNQEFAEVPIPPNLMTGTSDALFDYIAAELAKFVAQEDEKFQLPPGKKRELGFTFSFPVT 182
           V QEF EV IPP+LM G+SDALFDYIAA LAKFVA E E   + PG++RELGFTFSFPV 
Sbjct: 61  VKQEFEEVSIPPHLMVGSSDALFDYIAAALAKFVATEGEGLHVSPGRQRELGFTFSFPVR 120

Query: 183 QTSIASGNLVRWTKGFSIDDAVGQDVVVALTKAMERKGVHMHVSALVNDTVGTLAGGKYF 242
           Q+SI+SG+L++WTKGFSI+DAVGQDVV  LTKAMER G+ M VSALVNDT+GTLAGG+Y+
Sbjct: 121 QSSISSGSLIKWTKGFSIEDAVGQDVVGELTKAMERIGLDMRVSALVNDTIGTLAGGRYY 180

Query: 243 NKDVVAAVILGTGTNAAYVERAQAIPKWHGALPESGEMVINMEWGNFRSSHLPLTKYDLA 302
           ++DVVAAVILGTGTNAAYVERAQ+IPKWHG LP+SG+MVINMEWGNFRSSHLPLT+YD  
Sbjct: 181 DQDVVAAVILGTGTNAAYVERAQSIPKWHGLLPKSGDMVINMEWGNFRSSHLPLTEYDQV 240

Query: 303 LDAESLNPGEQIFEKIISGMYLGEIVRRVLLRMAEEASFFGDAVPPKLRVPFILRTPDMS 362
           LDAESLNPGEQIFEKIISGMYLG+IVRRVL RMAEEA  FGD VPPKL++PFILRTPDMS
Sbjct: 241 LDAESLNPGEQIFEKIISGMYLGDIVRRVLCRMAEEADLFGDTVPPKLKIPFILRTPDMS 300

Query: 363 AMHHDTSSDLKVVGNK 378
           AMHHDTS DL+VVG+K
Sbjct: 301 AMHHDTSPDLRVVGSK 316


>GSVIVT01031551001 assembled CDS
          Length = 523

 Score =  410 bits (1053), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 197/332 (59%), Positives = 249/332 (75%), Gaps = 1/332 (0%)

Query: 41  IVKELKEQCATPIAKLKQVGDAMVVEMHAGLASEGGSKLKMLISYVDNLPTGDENGLFYA 100
           ++++L+E C T + +L+QV DAM VEMHAGLASEGGSKLKML+++VD LP G E G +YA
Sbjct: 40  VLRDLEEACETSVGRLRQVVDAMAVEMHAGLASEGGSKLKMLLTFVDKLPNGSERGKYYA 99

Query: 101 LDLGGTNFRVLRVHLGGKDGRLVNQEFAEVPIPPNLMTGTSDALFDYIAAELAKFVAQED 160
           LDLGGTNFRVL++ LGGK   +++ +    PIP +LMT TS+ LFD+IA+ L +FV +E 
Sbjct: 100 LDLGGTNFRVLQIQLGGKTSSILSCDVERQPIPQDLMTSTSEDLFDFIASSLKQFVEREA 159

Query: 161 EKFQLPPGKKRELGFTFSFPVTQTSIASGNLVRWTKGFSIDDAVGQDVVVALTKAMERKG 220
           +  +  P K+RELGFTFSFPV QTS++SG L++WTK FS+ D VG+DV   L  AM R G
Sbjct: 160 QNSEFSPVKRRELGFTFSFPVKQTSVSSGILIKWTKRFSVKDMVGKDVSECLQHAMTRNG 219

Query: 221 VHMHVSALVNDTVGTLAGGKYFNKDVVAAVILGTGTNAAYVERAQAIPKWHGALPESGEM 280
           + M V+ LVNDTVGTLA G Y + D VAAVI+GTGTNA Y+ER  AI K  G L  SG M
Sbjct: 220 LDMRVAVLVNDTVGTLALGHYNDPDTVAAVIIGTGTNACYLERTDAIIKCQGLLTTSGGM 279

Query: 281 VINMEWGNFRSSHLPLTKYDLALDAESLNPGEQIFEKIISGMYLGEIVRRVLLRMAEEAS 340
           V+NMEWGNF SSHLP T YD+ LD +S NP +Q FEK+ISGMYLG+IVRRV+LRM++E+ 
Sbjct: 280 VVNMEWGNFWSSHLPRTSYDIDLDGDSPNPNDQGFEKMISGMYLGDIVRRVILRMSQESD 339

Query: 341 FFGDAVPPKLRVPFILRTPDMSAMHHDTSSDL 372
            FG  V  +L +PFIL TP M+ MH D S +L
Sbjct: 340 IFG-PVSSRLSMPFILSTPSMADMHADESPEL 370


>GSVIVT01009899001 assembled CDS
          Length = 411

 Score =  395 bits (1014), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 189/296 (63%), Positives = 224/296 (75%), Gaps = 1/296 (0%)

Query: 81  MLISYVDNLPTGDENGLFYALDLGGTNFRVLRVHLGGKDGRLVNQEFAEVPIPPNLMTGT 140
           M++SYVD  PTG+E GLFYALDLGGTNFRVLRV LGGKD R++  EF +V IP  LM GT
Sbjct: 1   MILSYVDTFPTGNEKGLFYALDLGGTNFRVLRVQLGGKDERVIATEFEQVTIPQELMFGT 60

Query: 141 SDALFDYIAAELAKFVAQEDEKFQLPPGKKRELGFTFSFPVTQTSIASGNLVRWTKGFSI 200
           S+ LFD+IA  LA F  +E  KF LP G+KRE+GFTFSFPV QTSI SG L++WTKGF++
Sbjct: 61  SEELFDFIACGLANFAKKEGGKFHLPSGRKREIGFTFSFPVKQTSIDSGILMKWTKGFAV 120

Query: 201 DDAVGQDVVVALTKAMERKGVHMHVSALVNDTVGTLAGGKYFNKDVVAAVILGTGTNAAY 260
               G+DVV  L +AMER+G+ M VSALVNDTVGTLAG +Y++ DV+ AVILGTGTNA Y
Sbjct: 121 SGTAGRDVVACLNEAMERQGLDMQVSALVNDTVGTLAGARYWDDDVMVAVILGTGTNACY 180

Query: 261 VERAQAIPKWHGALPESGEMVINMEWGNFRSSHLPLTKYDLALDAESLNPGEQIFEKIIS 320
           VER   IPK  G +  SG  +I+ EWG F S+ LPLT++D  +DA S+NPGEQIFEK IS
Sbjct: 181 VERTDVIPKLQGQMSSSGRTIISTEWGAF-SNGLPLTEFDRDMDAASINPGEQIFEKTIS 239

Query: 321 GMYLGEIVRRVLLRMAEEASFFGDAVPPKLRVPFILRTPDMSAMHHDTSSDLKVVG 376
           GMYLGEIVRRVLL+MAE  + FG+ V  KL  PFILRTPD+ AM  D S  L  VG
Sbjct: 240 GMYLGEIVRRVLLKMAEAGALFGEYVSEKLSTPFILRTPDICAMQQDNSDHLDAVG 295


>GSVIVT01002667001 assembled CDS
          Length = 479

 Score =  363 bits (933), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 176/357 (49%), Positives = 244/357 (68%), Gaps = 5/357 (1%)

Query: 26  RRKMRRDGKLAKAMEIVKELKEQCATPIAKLKQVGDAMVVEMHAGLASEGGSKLKMLISY 85
           R K   + +  K   I+++    CATP++KL  V DA+V +M+  L S+  + L M ISY
Sbjct: 11  RWKQESERQWRKTRRILRKFARDCATPVSKLWLVADALVSDMNEALTSQETTTLNMPISY 70

Query: 86  VDNLPTGDENGLFYALDLGGTNFRVLRVHLGGKDGRLVNQEFAEVPIPPNLMTGTSDALF 145
           V +LP+GDE GL+Y L+L G+NF +LR  L GK+  +      EV IP N+M GTS  LF
Sbjct: 71  VASLPSGDEEGLYYGLNLRGSNFLILRARLRGKNESISELHREEVSIPSNVMGGTSQELF 130

Query: 146 DYIAAELAKFVAQEDEKFQLPPGKKRELGFTFSFPVTQTSIASGNLVRWTKGFSIDDAV- 204
           DYIA ELAKF+++ +      P +++ LGF  S+PV Q + +SG  ++W + FS+ D V 
Sbjct: 131 DYIALELAKFISEHEVTTDDTPDRQKALGFIVSYPVDQAAASSGAAIKW-RSFSVTDTVE 189

Query: 205 --GQDVVVALTKAMERKGVHMHVSAL-VNDTVGTLAGGKYFNKDVVAAVILGTGTNAAYV 261
             G+ +     +A+E+ GV++ V  L V D +G LAGG+Y+N+D VAA+ LG  T AAYV
Sbjct: 190 CAGKALASNFNRALEKHGVNLRVLQLQVEDAIGHLAGGRYYNRDTVAAITLGMATTAAYV 249

Query: 262 ERAQAIPKWHGALPESGEMVINMEWGNFRSSHLPLTKYDLALDAESLNPGEQIFEKIISG 321
           E  QA+P++  +  +S EMVI+M+WGNF S HLP+T++D  LDAES NPG +IFEK+ SG
Sbjct: 250 EPTQAVPEYQSSSNKSSEMVISMDWGNFNSCHLPITEFDTFLDAESSNPGSRIFEKLTSG 309

Query: 322 MYLGEIVRRVLLRMAEEASFFGDAVPPKLRVPFILRTPDMSAMHHDTSSDLKVVGNK 378
           MYLGEIVRRVLL+MA+E + FG+ VPPKLR P++LR+PDM+AMH DTS D +VV  K
Sbjct: 310 MYLGEIVRRVLLKMAQETALFGEDVPPKLRTPYLLRSPDMAAMHQDTSEDHEVVHEK 366


>GSVIVT01006129001 assembled CDS
          Length = 202

 Score =  132 bits (333), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 59/88 (67%), Positives = 73/88 (82%)

Query: 291 SSHLPLTKYDLALDAESLNPGEQIFEKIISGMYLGEIVRRVLLRMAEEASFFGDAVPPKL 350
           S HLP+T++D  LDAES NPG +IFEK+ SGMYLGEIVRRVLL+MA+E + FG+ VPPKL
Sbjct: 2   SCHLPITEFDTFLDAESSNPGSRIFEKLTSGMYLGEIVRRVLLKMAQETALFGEDVPPKL 61

Query: 351 RVPFILRTPDMSAMHHDTSSDLKVVGNK 378
           R P++LR+PDM+AMH DTS D +VV  K
Sbjct: 62  RTPYLLRSPDMAAMHQDTSEDHEVVHEK 89


>GSVIVT01034893001 assembled CDS
          Length = 61

 Score = 73.2 bits (178), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/56 (62%), Positives = 41/56 (73%)

Query: 322 MYLGEIVRRVLLRMAEEASFFGDAVPPKLRVPFILRTPDMSAMHHDTSSDLKVVGN 377
           MYLGEIVRRVLL+MA+E S F + VP K R P +LR+ DM  MH DTS D +V GN
Sbjct: 1   MYLGEIVRRVLLKMAQETSLFVEDVPSKPRTPCLLRSLDMVVMHQDTSEDHEVDGN 56