Jatropha Genome Database

JcCB0120781.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0120781.10 + phase: 0 
         (130 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01026137001 assembled CDS                                       214   1e-56
GSVIVT01013850001 assembled CDS                                       121   1e-28
GSVIVT01024575001 assembled CDS                                        69   9e-13
GSVIVT01032675001 assembled CDS                                        68   9e-13

>GSVIVT01026137001 assembled CDS
          Length = 321

 Score =  214 bits (544), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 106/130 (81%), Positives = 118/130 (90%)

Query: 1   MQPGGGEMPELGVLQQIEKDFGSFTNFKEKFVEAALTLFGSGWIWLVLKREERQLAITKT 60
           MQPGGG+MP LG+L+QIEKDFGSFTNFKEKF+EAALTLFGSGW+WLVLKR ER LA+ KT
Sbjct: 192 MQPGGGDMPRLGLLEQIEKDFGSFTNFKEKFLEAALTLFGSGWVWLVLKRNERCLAVVKT 251

Query: 61  SNAITPLVWDNIPIICLDMWEHAYYLDYKNDKGSYVNAFMNHLLSWNVAMARMARAEAFV 120
           SNAI P+VWD+IPII LD+WEHAYYLDYKNDKG Y   FMNHL+SWN A ARMARAEAFV
Sbjct: 252 SNAINPIVWDDIPIISLDVWEHAYYLDYKNDKGKYATVFMNHLVSWNAAAARMARAEAFV 311

Query: 121 NLGDPKIPVA 130
           NLG+PKIP+A
Sbjct: 312 NLGEPKIPIA 321


>GSVIVT01013850001 assembled CDS
          Length = 306

 Score =  121 bits (303), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 58/135 (42%), Positives = 83/135 (61%), Gaps = 15/135 (11%)

Query: 1   MQPGGGEMPELGVLQQIEKDFGSFTNFKEKFVEAALTLFGSGWIWLVLK----------- 49
           M+PGGG  P   +L+ I++DFGSF  F E+F  AA T FGSGW WL  K           
Sbjct: 131 MKPGGGGEPSGDLLELIKRDFGSFERFVEEFKLAASTQFGSGWAWLAYKANRLDVGNAVN 190

Query: 50  ----REERQLAITKTSNAITPLVWDNIPIICLDMWEHAYYLDYKNDKGSYVNAFMNHLLS 105
                E+++L + K+ NAI PL+WD  P++ +D+WEHAYYLD++N +  Y++ FM  L+S
Sbjct: 191 PRPSEEDKKLVVVKSPNAINPLLWDCNPLLTIDVWEHAYYLDFQNHRPDYISIFMEKLVS 250

Query: 106 WNVAMARMARAEAFV 120
           W    +R+  A+A V
Sbjct: 251 WEAVSSRLEMAKAQV 265


>GSVIVT01024575001 assembled CDS
          Length = 228

 Score = 68.6 bits (166), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 40/98 (40%), Positives = 52/98 (53%), Gaps = 8/98 (8%)

Query: 4   GGGEMPE--LGVLQQIEKDFGSFTNFKEKFVEAALTLFGSGWIWLVLKREERQLAITKTS 61
           GGGE P   LGV       +GS     +K       L GSGW+WL L +E ++L I  T 
Sbjct: 113 GGGEPPNGLLGV--AFHSSYGSLEALMQKINAEGAALQGSGWVWLALDKEMKRLQIETTQ 170

Query: 62  NAITPLVWDN---IPIICLDMWEHAYYLDYKNDKGSYV 96
           N   PLV      +P++ +D+WEHAY L YKN K  Y+
Sbjct: 171 NQ-DPLVTKGPNLVPLLGIDVWEHAYNLQYKNVKADYL 207


>GSVIVT01032675001 assembled CDS
          Length = 154

 Score = 68.2 bits (165), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 36/99 (36%), Positives = 55/99 (55%), Gaps = 4/99 (4%)

Query: 1   MQPGGGEMPELGVLQQIEKDFGSFTNFKEKFVEAALTLFGSGWIWLVLKREERQLAITKT 60
           +  GGGE P+  +   I+  FGS      K       + GSGW+WL L ++ ++L +  T
Sbjct: 36  VHEGGGEPPKGSLGWAIDTHFGSMEALVAKINSEGAAVQGSGWVWLGLDKDLKKLVVETT 95

Query: 61  SNAITPLVWDN---IPIICLDMWEHAYYLDYKNDKGSYV 96
           +N   PLV      +P++ +D+WEHAYYL YKN +  Y+
Sbjct: 96  ANQ-DPLVTKGPNLVPLLGIDVWEHAYYLQYKNVRPDYL 133