Jatropha Genome Database

JcCB0120561.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0120561.20 + phase: 0 /partial
         (150 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01031904001 assembled CDS                                       179   4e-46
GSVIVT01009627001 assembled CDS                                       140   3e-34
GSVIVT01003757001 assembled CDS                                        52   1e-07
GSVIVT01010742001 assembled CDS                                        48   2e-06

>GSVIVT01031904001 assembled CDS
          Length = 589

 Score =  179 bits (454), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 83/123 (67%), Positives = 101/123 (82%), Gaps = 1/123 (0%)

Query: 25  NEESDFRWAPPKGPSTKIITKASLLAAQREDLRRVMELLSLREHHARTLLIHYRWDVERL 84
           NEESDF+W PPK PS+++ITK SLL AQR+DLRRVM+LLSLREHHARTLLIH+RWDVE+L
Sbjct: 24  NEESDFQWVPPKAPSSQVITKESLLTAQRDDLRRVMDLLSLREHHARTLLIHHRWDVEKL 83

Query: 85  LAVFVEKGKSYLFTEAGVTVVEQLDIDSPLTSSSTITCDICIEDISGDKATRMDCGHCYC 144
            AV VEKGK  LF EAGV ++E   +  PL SSST+ CDIC+E +    +T+MDCGHC+C
Sbjct: 84  FAVMVEKGKPCLFAEAGVPLMEHQIVPLPL-SSSTLMCDICMEAVCSKDSTKMDCGHCFC 142

Query: 145 NDC 147
           N+C
Sbjct: 143 NNC 145


>GSVIVT01009627001 assembled CDS
          Length = 555

 Score =  140 bits (353), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 69/109 (63%), Positives = 87/109 (79%), Gaps = 1/109 (0%)

Query: 39  STKIITKASLLAAQREDLRRVMELLSLREHHARTLLIHYRWDVERLLAVFVEKGKSYLFT 98
           S+K+ITK SLL AQ+EDL RVM+LL L EHHAR+LLIH RWDVER+LAV VEKGK  L+ 
Sbjct: 42  SSKVITKESLLTAQKEDLHRVMDLLPLGEHHARSLLIHCRWDVERVLAVLVEKGKEQLYA 101

Query: 99  EAGVTVVEQLDIDSPLTSSSTITCDICIEDISGDKATRMDCGHCYCNDC 147
           +AGVTVVE  D+ S    SS +TC+IC++D+S ++ T MDCGH +CN+C
Sbjct: 102 DAGVTVVEHDDL-SLSKFSSPLTCNICVDDVSTNEMTIMDCGHYFCNNC 149


>GSVIVT01003757001 assembled CDS
          Length = 581

 Score = 51.6 bits (122), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/107 (28%), Positives = 54/107 (50%), Gaps = 7/107 (6%)

Query: 42  IITKASLLAAQREDLRRVMELLSLREHHARTLLIHYRWDVERLL-AVFVEKGKSYLFTEA 100
           I+T+A +   Q +D+ R+  +LS+    A  LL HY W V ++    F ++ K       
Sbjct: 54  ILTEADIRQRQEDDITRISTVLSIPRVSASILLRHYYWSVSKVHDEWFADEEK----VRK 109

Query: 101 GVTVVEQLDIDSPLTSSSTITCDICIEDISGDKATRMDCGHCYCNDC 147
            V ++E+  +  P  ++  +TC IC E+   D+ +   CGH +C  C
Sbjct: 110 AVGLLEKPVVQFP--NARELTCGICFENYPRDRISSAACGHPFCGTC 154


>GSVIVT01010742001 assembled CDS
          Length = 516

 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 52/111 (46%), Gaps = 7/111 (6%)

Query: 38  PSTKIITKASLLAAQREDLRRVMELLSLREHHARTLLIHYRWDVERLL-AVFVEKGKSYL 96
           P+  I+ +  +   Q +D+ RV  +LS+    A  LL HY W V ++    F ++ +   
Sbjct: 7   PNYTILKEEDIHQHQEDDIARVAAVLSIASVSASILLRHYHWSVSKVNDEWFADESR--- 63

Query: 97  FTEAGVTVVEQLDIDSPLTSSSTITCDICIEDISGDKATRMDCGHCYCNDC 147
                V ++E+  +  P  ++  +TC IC E    D      CGH +C+ C
Sbjct: 64  -VRKAVGLLEEPLVRYP--NAKELTCGICFETYPRDMIQSAACGHPFCSTC 111