Jatropha Genome Database

JcCB0119211.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0119211.10 + phase: 0 /TE/partial
         (517 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01009548001 assembled CDS                                        71   1e-12

>GSVIVT01009548001 assembled CDS
          Length = 849

 Score = 70.9 bits (172), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 46/82 (56%)

Query: 436 FRMENAKAVSCPLTNHFKLSSKQYPSTDREKEEMEKIPYASAVGSLMYAMICTRPDITHS 495
           F M   K     +    KL ++  P  D EK+ M+ IPYASA+GSLMYA  C RP+I   
Sbjct: 558 FNMHTCKDGDVLVVKGDKLGNEHCPKNDLEKDAMKAIPYASAIGSLMYAQACIRPNIVFI 617

Query: 496 VGVVSRLLLNSGKEYWTAVKWI 517
           V V+ R L N G+ +W A K +
Sbjct: 618 VNVLGRYLSNLGQYHWVAAKKV 639