Jatropha Genome Database

JcCB0118411.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0118411.10 - phase: 1 /TE/partial
         (259 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01028612001 assembled CDS                                       245   2e-65
GSVIVT01015124001 assembled CDS                                       117   4e-27
GSVIVT01034745001 assembled CDS                                       116   1e-26
GSVIVT01037631001 assembled CDS                                       112   1e-25
GSVIVT01011363001 assembled CDS                                       109   1e-24
GSVIVT01038695001 assembled CDS                                        70   9e-13
GSVIVT01020881001 assembled CDS                                        55   2e-08
GSVIVT01036343001 assembled CDS                                        54   6e-08

>GSVIVT01028612001 assembled CDS
          Length = 3048

 Score =  245 bits (625), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 121/247 (48%), Positives = 168/247 (68%), Gaps = 3/247 (1%)

Query: 15  IPHFDGHYDHWSELMENLLRAKDLWSLVEKGFTEPLEETRLTEAQQTQLDDDRTKDYQVK 74
           I  FDG+YDHW+ LMEN LR+K+ W LV  G     E+  LT+AQ+  ++D + KD + K
Sbjct: 36  ISKFDGYYDHWAMLMENFLRSKEYWGLVVNGVPAVAEDAVLTDAQRKHIEDQQLKDLKAK 95

Query: 75  HYLFQAIDRTVFEQILDRRTSKIVWDSLKRKFGGNQKVKKSLLNALRREFEVLEMRNDET 134
           +YLFQA+DR++ E IL+++T+K +WDS+K+KF G  +VK+  L ALR+EF++L M++ ET
Sbjct: 96  NYLFQALDRSILETILNKKTTKDIWDSMKQKFQGTTRVKRGNLQALRKEFKILHMKSGET 155

Query: 135 ITEYFARVMLVANKMRSNGEEMPDKKIVEKILRTLTDKFTYVVVSIEESKDTDTMSIDEL 194
           + EYF+R + +ANKM+ NGE+  +  +VEKILR++T KF YVV SIEESKD DT++IDEL
Sbjct: 156 VNEYFSRTLAIANKMKVNGEDKGNTAVVEKILRSMTSKFDYVVCSIEESKDLDTLTIDEL 215

Query: 195 QSSLVVHEQKFRRPSNNNEDQALKVE--GRSNTSNXXXXXXXXXXXXXXXTSFNKATVEC 252
           QSSL+VHEQ+        E+QALKV     S +                   F+KAT+EC
Sbjct: 216 QSSLLVHEQRMTS-HVLEEEQALKVTHGDHSGSRGRGHGNYRGRGRGRNRRFFDKATMEC 274

Query: 253 YRCHDLG 259
           Y CH LG
Sbjct: 275 YNCHKLG 281


>GSVIVT01015124001 assembled CDS
          Length = 780

 Score =  117 bits (294), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 69/210 (32%), Positives = 118/210 (56%), Gaps = 2/210 (0%)

Query: 16  PHFDG-HYDHWSELMENLLRAKDLWSLVEKGFTEPLEETRLTEAQQTQLDDDRTKDYQVK 74
           P FDG +Y  W+  ME  L A DLW  V + +  P      T AQ    ++ R +  +VK
Sbjct: 13  PMFDGINYQVWAVRMEAYLDASDLWEAVSEEYEVPPLSDNPTIAQIKLHNERRQRKSKVK 72

Query: 75  HYLFQAIDRTVFEQILDRRTSKIVWDSLKRKFGGNQKVKKSLLNALRREFEVLEMRNDET 134
             LF  +  T+F +I+  +T+  +W+ LK+++ GN++VK   +  L REFE+  M+  ET
Sbjct: 73  ASLFAVVSSTIFTRIMTLKTTNEIWNFLKKEYEGNERVKGMQVLNLIREFEMQRMKESET 132

Query: 135 ITEYFARVMLVANKMRSNGEEMPDKKIVEKILRTLTDKFTYVVVSIEESKDTDTMSIDEL 194
           I +Y  +++ + NK+R  G +  + +IV+KI  T+++KF   + S+E SKD  ++++ EL
Sbjct: 133 IKDYSDKLLSIVNKVRLLGVDFSNSRIVQKIFITVSEKFENTISSLENSKDVSSITLAEL 192

Query: 195 QSSLVVHEQ-KFRRPSNNNEDQALKVEGRS 223
            ++L   EQ +  R   + E+    + G S
Sbjct: 193 LNALQAQEQRRLMRQEGSVEENPFSILGES 222


>GSVIVT01034745001 assembled CDS
          Length = 2196

 Score =  116 bits (290), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 68/195 (34%), Positives = 111/195 (56%), Gaps = 1/195 (0%)

Query: 11  TLTKIPHFDG-HYDHWSELMENLLRAKDLWSLVEKGFTEPLEETRLTEAQQTQLDDDRTK 69
           T + I  F+G HY  W+  M   LR++ LW++V      P      T AQ    ++++ K
Sbjct: 7   TSSVISVFNGEHYHIWAVKMRFYLRSQGLWNVVMSEADPPPLGANPTVAQMKAYEEEKLK 66

Query: 70  DYQVKHYLFQAIDRTVFEQILDRRTSKIVWDSLKRKFGGNQKVKKSLLNALRREFEVLEM 129
             +    L   +   +F +I++  T K+VWD L+ +F G+++ K   L  L+REFE+++M
Sbjct: 67  KDKAITCLHSGLTDHIFTKIMNLETPKLVWDKLQGEFEGSERFKTVRLLKLKREFELMKM 126

Query: 130 RNDETITEYFARVMLVANKMRSNGEEMPDKKIVEKILRTLTDKFTYVVVSIEESKDTDTM 189
           ++DE + +Y  R+M V N++R  GE   D+K+VEKI+  +  KF   + +IEES D  T+
Sbjct: 127 KDDEFVKDYSGRLMDVVNQIRLLGEAFTDQKVVEKIMVLVPQKFEAKISAIEESCDLQTL 186

Query: 190 SIDELQSSLVVHEQK 204
           +I EL S L   EQ+
Sbjct: 187 TIVELTSKLHAQEQR 201


>GSVIVT01037631001 assembled CDS
          Length = 1940

 Score =  112 bits (281), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 66/211 (31%), Positives = 119/211 (56%), Gaps = 1/211 (0%)

Query: 18  FDG-HYDHWSELMENLLRAKDLWSLVEKGFTEPLEETRLTEAQQTQLDDDRTKDYQVKHY 76
            DG +Y+ W+  M   L+A D+W  VE+ +  P      T AQ     + RT+  + K  
Sbjct: 732 LDGDNYETWAVRMTVHLQALDVWEAVEENYEVPPLGANPTVAQMKLHKERRTRKAKAKAC 791

Query: 77  LFQAIDRTVFEQILDRRTSKIVWDSLKRKFGGNQKVKKSLLNALRREFEVLEMRNDETIT 136
           LF A+  ++F +I+   ++  +W+ LK ++ G++++K   +  L REFE+ +MR  + + 
Sbjct: 792 LFAAVSPSIFIKIMKIDSAAEIWEYLKEEYKGDERIKNMQVMNLIREFEMKKMRESDAVK 851

Query: 137 EYFARVMLVANKMRSNGEEMPDKKIVEKILRTLTDKFTYVVVSIEESKDTDTMSIDELQS 196
           +Y A+++ +A+K+R  G+E  ++KIV+KIL TL +K+   + S+E SKD  T+S+ EL  
Sbjct: 852 DYAAQLLSIADKVRLLGKEFSNEKIVQKILVTLPEKYEATISSLENSKDLSTISLTELLH 911

Query: 197 SLVVHEQKFRRPSNNNEDQALKVEGRSNTSN 227
           SL   EQ+      +  + A +   + N  +
Sbjct: 912 SLEAVEQRRLMRQGDTAEGAFQARMQKNAGH 942


>GSVIVT01011363001 assembled CDS
          Length = 1752

 Score =  109 bits (272), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 59/180 (32%), Positives = 107/180 (59%), Gaps = 2/180 (1%)

Query: 8   DDKTLTKIPH-FDG-HYDHWSELMENLLRAKDLWSLVEKGFTEPLEETRLTEAQQTQLDD 65
           ++ +LT  P   DG +Y+ W+  M   L+A D+W  VE+ +  P      T AQ     +
Sbjct: 2   EESSLTVAPSILDGDNYETWAVRMTVHLQALDVWEAVEENYEVPPLGANPTVAQMKLHKE 61

Query: 66  DRTKDYQVKHYLFQAIDRTVFEQILDRRTSKIVWDSLKRKFGGNQKVKKSLLNALRREFE 125
            RT+  + K  LF A+  ++F +I+   ++  +W+ LK ++ G++++K   +  L REFE
Sbjct: 62  RRTRKAKAKACLFAAVSPSIFIKIMKIDSAAEIWEYLKEEYKGDERIKNMQVMNLIREFE 121

Query: 126 VLEMRNDETITEYFARVMLVANKMRSNGEEMPDKKIVEKILRTLTDKFTYVVVSIEESKD 185
           + +MR  + + +Y A+++ +A+K+R  G+E  ++KIV+KIL TL +K+   + S+E SKD
Sbjct: 122 MKKMRESDAVKDYAAQLLSIADKVRLLGKEFSNEKIVQKILVTLPEKYEATISSLENSKD 181


>GSVIVT01038695001 assembled CDS
          Length = 740

 Score = 70.1 bits (170), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 36/85 (42%), Positives = 59/85 (69%)

Query: 120 LRREFEVLEMRNDETITEYFARVMLVANKMRSNGEEMPDKKIVEKILRTLTDKFTYVVVS 179
           L REFE+ +MR  + + +Y A+++ +A+K+R  G+E  ++KIV+KIL TL +K+  ++ S
Sbjct: 6   LIREFEMKKMRESDAVKDYAAQLLSIADKVRLLGKEFSNEKIVQKILVTLPEKYEAIISS 65

Query: 180 IEESKDTDTMSIDELQSSLVVHEQK 204
           +E SKD  T+S+ EL  SL   EQ+
Sbjct: 66  LENSKDLSTISLTELLHSLEAVEQR 90


>GSVIVT01020881001 assembled CDS
          Length = 645

 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 35/99 (35%), Positives = 48/99 (48%), Gaps = 8/99 (8%)

Query: 15  IPHFDGH-YDHWSELMENLLRAKDLWSLVEKGFTEPLEETRLTEAQQTQLDDDRTKDYQV 73
           IP F G  YD WS  M  L  ++DLW LV+ G+ E        E  +  + D R KD + 
Sbjct: 9   IPCFQGSGYDIWSSKMRTLFISEDLWELVDMGYIE-------EEISKNAIRDVRKKDAKA 61

Query: 74  KHYLFQAIDRTVFEQILDRRTSKIVWDSLKRKFGGNQKV 112
              + QAI   +F QI     SK  WD+L+ ++    KV
Sbjct: 62  LFLIQQAIAENIFPQISKATKSKEAWDALQIEYQRTTKV 100


>GSVIVT01036343001 assembled CDS
          Length = 1201

 Score = 54.3 bits (129), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 44/200 (22%), Positives = 93/200 (46%), Gaps = 21/200 (10%)

Query: 25  WSELMENLLRAKDLWSLVEKGFTEPLEETRLTEAQQT---QLDDD----RTKDYQVKHYL 77
           W   MEN++ A         GF + +E  R    +     +++ D    R  D  +  ++
Sbjct: 141 WHTQMENVIYAN--------GFEDHIEGLRPCPPKTISTGEVNPDFLVWRRYDRMILSWI 192

Query: 78  FQAIDRTVFEQILDRRTSKIVWDSLKRKFGGNQKVKKSLLNALRREFEVLEMRNDETITE 137
           + ++   V  QI+  +TS   W +L+R F  + K +      LR  F+    +   T+ E
Sbjct: 193 YSSLTPDVMGQIVGLQTSHEAWTALQRSFSASTKARTM---QLRLAFQT-NKKGSLTMME 248

Query: 138 YFARVMLVANKMRSNGEEMPDKKIVEKILRTLTDKFTYVVVSIEESKDTDTMSIDELQSS 197
           Y  ++  +++ + + GE +P+K  + ++L  L  ++  ++ S+  ++D D + +  + S 
Sbjct: 249 YIQKLKHISDSLAAIGEPVPEKDQILQLLSGLGAEYNPIIASL-TTRD-DDIQLHAVHSI 306

Query: 198 LVVHEQKFRRPSNNNEDQAL 217
           L+ HEQ+    +   E+  L
Sbjct: 307 LLTHEQRLPLQTTPTEEDLL 326