Jatropha Genome Database

JcCB0118121.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0118121.10 + phase: 2 /pseudo/partial
         (645 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01025216001 assembled CDS                                       108   6e-24

>GSVIVT01025216001 assembled CDS
          Length = 1452

 Score =  108 bits (271), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 80/213 (37%), Positives = 119/213 (55%), Gaps = 25/213 (11%)

Query: 67   DLELLKSIAWRTIIIDECQRSSISRDFKQFKMIAADMRLLISSQV-KDNSAHYISMLSLI 125
            DLE+L+ + W  +IIDE +   +     Q K       L+    + ++++  ++++LS +
Sbjct: 797  DLEVLECLGWEAVIIDEYK--GMFPHLLQIKFCFVTYLLMEFYWILQESTLEFVNLLSFL 854

Query: 126  NSREDELNNGNMKIHDSAD-VAKLKEILAPYTAYECKSDSFCYEEYWVPVQLSNVQLEQY 184
            +S  D +N+ N+   D  D V+ LKE L+ + AY+CKSDS  + EYWVP+ LSNVQLEQY
Sbjct: 855  DSGND-VNSSNVLKTDYNDSVSILKERLSQFIAYDCKSDSSRFVEYWVPIPLSNVQLEQY 913

Query: 185  CAVLLSNPVLL---FKNDTVDALREIIISIRK------------QSVIREGLPAEEYLDA 229
            C  LLSN + L    KND V ALR+++IS RK            QS + +GLP  EYLD 
Sbjct: 914  CGTLLSNTISLCSCSKNDPVGALRDVLISTRKCCDHPYIVDLSLQSFLTKGLPEIEYLDV 973

Query: 230  EIQVA-----LDGILLETFWKNLFVKDLVRIVG 257
             I  +     LD ++ E   + L V  L + +G
Sbjct: 974  GINASGKLQLLDRMISEIKNRGLRVLILFQSIG 1006



 Score = 86.7 bits (213), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 54/140 (38%), Positives = 82/140 (58%), Gaps = 3/140 (2%)

Query: 279  KLKVFRLYSRYTVEERALIHAKKSGSNEINVDYMNRDSCYSLLGWGLARLFNKLDDFHQC 338
            K+K+FRLYS +TVEE++LI AK   + + N+  ++R + + LL WG + LFNKL+ FH  
Sbjct: 1105 KIKLFRLYSPFTVEEKSLILAKHDMALDSNLQNISRSTSHMLLMWGASYLFNKLEKFHGS 1164

Query: 339  KTLASGSKIYSEWPFLDNVLQELLDQLLCNRED-EPSIYSFISKAQQDAGAYTREISVID 397
                S +   SE   L  V+QELL  L  N  + + S  S I K +Q+  +Y + +++  
Sbjct: 1165 DAPDSRTDTSSEQSLLKGVMQELLILLPHNGANIDLSNSSIIIKVKQNEISYCKNVTLHG 1224

Query: 398  EKEVQDTG--PPALFWDKIF 415
            E E+Q T   PP +FW K+ 
Sbjct: 1225 ELEIQSTDKVPPHVFWTKLL 1244