Jatropha Genome Database

JcCB0117851.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0117851.20 + phase: 0 /partial
         (59 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01003875001 assembled CDS                                        92   5e-20
GSVIVT01035957001 assembled CDS                                        88   7e-19
GSVIVT01007958001 assembled CDS                                        83   3e-17
GSVIVT01022808001 assembled CDS                                        78   9e-16

>GSVIVT01003875001 assembled CDS
          Length = 947

 Score = 92.0 bits (227), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 43/47 (91%), Positives = 46/47 (97%)

Query: 1   SSVLALEDSALDVDQVDNLIKFCPTKEEMELLKGYTGEKEKLGKCEQ 47
           +SVLALEDSALDVDQVDNLIKFCPTK+E+ELLKGY GEKEKLGKCEQ
Sbjct: 687 NSVLALEDSALDVDQVDNLIKFCPTKDEIELLKGYKGEKEKLGKCEQ 733


>GSVIVT01035957001 assembled CDS
          Length = 1642

 Score = 88.2 bits (217), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 41/47 (87%), Positives = 44/47 (93%)

Query: 1    SSVLALEDSALDVDQVDNLIKFCPTKEEMELLKGYTGEKEKLGKCEQ 47
            SSVLAL+DSALDVDQVDNLIKFCPTKEE+ELLKGY G+K  LGKCEQ
Sbjct: 1251 SSVLALDDSALDVDQVDNLIKFCPTKEEIELLKGYNGDKGNLGKCEQ 1297


>GSVIVT01007958001 assembled CDS
          Length = 1010

 Score = 83.2 bits (204), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 37/47 (78%), Positives = 44/47 (93%)

Query: 1   SSVLALEDSALDVDQVDNLIKFCPTKEEMELLKGYTGEKEKLGKCEQ 47
           ++VLA+++S LDVDQV+NLIKFCPTKEEMELLK YTG+KE LGKCEQ
Sbjct: 703 AAVLAMDESILDVDQVENLIKFCPTKEEMELLKAYTGDKEALGKCEQ 749


>GSVIVT01022808001 assembled CDS
          Length = 1082

 Score = 77.8 bits (190), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 34/47 (72%), Positives = 41/47 (87%)

Query: 1   SSVLALEDSALDVDQVDNLIKFCPTKEEMELLKGYTGEKEKLGKCEQ 47
           +++LAL+ S LD+DQV+NLIKFCPTKEEMELLK Y G+K  LGKCEQ
Sbjct: 759 NAILALDSSTLDIDQVENLIKFCPTKEEMELLKNYPGDKAMLGKCEQ 805