Jatropha Genome Database

JcCB0117851.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0117851.10 - phase: 1 /partial
         (279 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01028874001 assembled CDS                                       313   6e-86
GSVIVT01028873001 assembled CDS                                       305   2e-83
GSVIVT01026991001 assembled CDS                                       304   3e-83
GSVIVT01026993001 assembled CDS                                       299   9e-82
GSVIVT01023105001 assembled CDS                                        92   2e-19
GSVIVT01007662001 assembled CDS                                        63   2e-10

>GSVIVT01028874001 assembled CDS
          Length = 727

 Score =  313 bits (802), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 160/285 (56%), Positives = 194/285 (68%), Gaps = 7/285 (2%)

Query: 1   RHDSLVMVSGGSGITPLISIIREVLFASTTDKCKTPQITLICSFKNSXXXXXXXXXXPIS 60
           RHD LVMVSGGSGITP ISIIRE+LF +     KTP++ L+ +FK S          P+S
Sbjct: 444 RHDMLVMVSGGSGITPFISIIRELLFRANRMSSKTPRVLLVSAFKKSLDVAMLDLLLPVS 503

Query: 61  GTPSAFSNLQLKIEAYVTREKEPTINNWNLIRTI--RSKPNSLIGEPVSAVLGGKSWLWX 118
           GT S  S LQL+IE YVTRE EPT  N  L+RTI    KPN+L   PVSA+LG  SWLW 
Sbjct: 504 GTTSDISQLQLQIEVYVTRETEPTRENQKLLRTIWFNFKPNTL-DVPVSAILGPNSWLWL 562

Query: 119 XXXXXXXXXXXXXXXXXXTRYYIYPIDHNTNEVFSYSFRSSLNMLVICIGIAMTASAAVL 178
                             TRYYI PIDHNTN ++SYS RS+LNML++C+ I+M A+AA L
Sbjct: 563 GTIMSSSFVIFLLIIGILTRYYIQPIDHNTNMIYSYSARSALNMLLMCVSISMPATAAFL 622

Query: 179 WNKRLNAREGNRIQSNLGPTPTFSP----HNGERELESLPHESLLQAIDVHYGERPDLKR 234
           WNK+   +E  +IQ+   PTPT SP    +N +RELE+ PH+S ++A  VHYGERP+L+R
Sbjct: 623 WNKKQATKEMRQIQNTAAPTPTTSPGSWFYNADRELEAFPHQSFVEATKVHYGERPNLRR 682

Query: 235 ILFECKSSSVGVLVCGPKKMRHEVATICSSRSADNLHFESISFSW 279
           I+ EC  SSVGVLV GP+KMR EVA ICSS  ADNLHFESISF+W
Sbjct: 683 IISECAGSSVGVLVSGPRKMRQEVAAICSSGLADNLHFESISFNW 727


>GSVIVT01028873001 assembled CDS
          Length = 1178

 Score =  305 bits (780), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 152/285 (53%), Positives = 187/285 (65%), Gaps = 7/285 (2%)

Query: 1    RHDSLVMVSGGSGITPLISIIREVLFASTTDKCKTPQITLICSFKNSXXXXXXXXXXPIS 60
            RH+SLVMVSGGSG+ P ISIIRE++F ST   CK P I LIC+FKNS          P+S
Sbjct: 895  RHESLVMVSGGSGVAPFISIIREIIFQSTKPNCKVPGILLICAFKNSADLTMLDLLLPVS 954

Query: 61   GTPSAFSNLQLKIEAYVTREKE-PTINNWNLIRTIRSKPNSLIGEPVSAVLGGKSWLWXX 119
            G  S  S +QL+IEAY+TREKE P  +   L+RTI  KPN+    P+SA LG  SWLW  
Sbjct: 955  GMTSDISQIQLQIEAYITREKEQPATDTQKLLRTIWFKPNT-SDAPISAALGPNSWLWLC 1013

Query: 120  XXXXXXXXXXXXXXXXXTRYYIYPIDHNTNEVFSYSFRSSLNMLVICIGIAMTASAAVLW 179
                             TRYYIYPI+H ++E++ +SFR   +M   C  I + AS   LW
Sbjct: 1014 AIIISSFIMFLLFLGILTRYYIYPIEHGSDEIYHFSFRCLWDMFFPCAAIFLAASGVFLW 1073

Query: 180  NKRLNAREGNRIQSNLGPTPTFSPH-----NGERELESLPHESLLQAIDVHYGERPDLKR 234
            +K+    EG +IQ+   PTP  SP      + +RELESLPH+SL++A  VH+G RPDLK+
Sbjct: 1074 HKKQATMEGKQIQNMEVPTPVASPGLWLCGSTDRELESLPHQSLVEATKVHFGARPDLKK 1133

Query: 235  ILFECKSSSVGVLVCGPKKMRHEVATICSSRSADNLHFESISFSW 279
            ILF+CK S VGVLVCGP+KMRHEVA ICSS  ADNLHFESISF+W
Sbjct: 1134 ILFDCKGSDVGVLVCGPRKMRHEVARICSSGLADNLHFESISFNW 1178


>GSVIVT01026991001 assembled CDS
          Length = 714

 Score =  304 bits (778), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 153/281 (54%), Positives = 190/281 (67%), Gaps = 4/281 (1%)

Query: 2   HDSLVMVSGGSGITPLISIIREVLFASTTDKCKTPQITLICSFKNSXXXXXXXXXXPISG 61
           HD+LVMVSGGSGITP IS+IRE++F+S+  K KTP+I LI SFK+S          PISG
Sbjct: 435 HDTLVMVSGGSGITPFISVIRELIFSSSVLKIKTPKILLISSFKSSSDLTMLDLILPISG 494

Query: 62  TPSAFSNLQLKIEAYVTREKEPTINNWNLIRTIRSKPNSLIGEPVSAVLGGKSWLWXXXX 121
            P   S L+L++EAYVTREKEP   N   ++ +  KP +    P SA+LG  SWLW    
Sbjct: 495 GPLDLSGLRLQVEAYVTREKEPATENVKPLQALWFKPKA-TDAPASAILGPNSWLWLGAV 553

Query: 122 XXXXXXXXXXXXXXXTRYYIYPIDHNTNEVFSYSFRSSLNMLVICIGIAMTASAAVLWNK 181
                          TRYYIYPIDHNT   +  S +++ N+L++C+ IA+TAS AVLWNK
Sbjct: 554 ISSSFVIFLVLMGLLTRYYIYPIDHNTGLDYPTSAQAAFNILLMCVSIAITASGAVLWNK 613

Query: 182 RLNAREGNRIQSNLGPTPTFSP---HNGERELESLPHESLLQAIDVHYGERPDLKRILFE 238
           + N  E  ++Q+  G +   SP   +N ++ELESLP +SL+Q+  VHYGERPDLKRILF+
Sbjct: 614 KQNTMEARQVQNMEGSSAYGSPASFYNSDKELESLPRQSLIQSTKVHYGERPDLKRILFD 673

Query: 239 CKSSSVGVLVCGPKKMRHEVATICSSRSADNLHFESISFSW 279
           CK   VGVL  GPKKMRHEVATICSS  ADNLHFESISFSW
Sbjct: 674 CKGKKVGVLASGPKKMRHEVATICSSGLADNLHFESISFSW 714


>GSVIVT01026993001 assembled CDS
          Length = 693

 Score =  299 bits (766), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 152/281 (54%), Positives = 189/281 (67%), Gaps = 4/281 (1%)

Query: 2   HDSLVMVSGGSGITPLISIIREVLFASTTDKCKTPQITLICSFKNSXXXXXXXXXXPISG 61
           HD+LVMVSGGSGITP IS+IRE++F+S+  K KTP+I LI SFK+S          P+SG
Sbjct: 414 HDTLVMVSGGSGITPFISVIRELIFSSSVLKIKTPKILLISSFKSSSDLTMLDLILPLSG 473

Query: 62  TPSAFSNLQLKIEAYVTREKEPTINNWNLIRTIRSKPNSLIGEPVSAVLGGKSWLWXXXX 121
            P   S+LQL++EAYVTREKEP   N   ++ +  KP +    P SA+LG  SWL     
Sbjct: 474 APLVLSSLQLQVEAYVTREKEPATENVKPLQALWFKPKA-TDAPASAILGPNSWLCLGAI 532

Query: 122 XXXXXXXXXXXXXXXTRYYIYPIDHNTNEVFSYSFRSSLNMLVICIGIAMTASAAVLWNK 181
                          TRYYIYPIDHNT   +  S +++ N+L++C+ IA+ AS AVLWNK
Sbjct: 533 ISSSFVIFLVLMGLLTRYYIYPIDHNTGLDYPTSAQAAFNILLMCVSIALAASGAVLWNK 592

Query: 182 RLNAREGNRIQSNLGPTPTFSP---HNGERELESLPHESLLQAIDVHYGERPDLKRILFE 238
           + N  E  ++Q+    +   SP   +N ++ELESLP +SL+Q+  VHYGERPDLKRILFE
Sbjct: 593 KQNTMEARQVQNMEASSAYGSPASFYNSDKELESLPRQSLIQSTKVHYGERPDLKRILFE 652

Query: 239 CKSSSVGVLVCGPKKMRHEVATICSSRSADNLHFESISFSW 279
           CK  SVGVL  GPKKMRHEVATICSS  ADNLHFESISFSW
Sbjct: 653 CKGKSVGVLASGPKKMRHEVATICSSGLADNLHFESISFSW 693


>GSVIVT01023105001 assembled CDS
          Length = 735

 Score = 92.4 bits (228), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 77/293 (26%), Positives = 128/293 (43%), Gaps = 23/293 (7%)

Query: 2   HDSLVMVSGGSGITPLISIIREVLFASTTDKCKTPQ-ITLICSFKNSXXXXXXXXXXPIS 60
           +++LV+V+GG GI+P ++I+ ++L ++  +K   P+ I +I + K S            S
Sbjct: 449 YENLVLVAGGIGISPFLAILSDILHSARENKTCLPRNILIIWAIKKSNELSLLSTVDMES 508

Query: 61  GTPSAFSNLQLKIEAYVTREKEPTINNWNLIRTIRSKPNSLI-GEPVSAVLGGKSWLWXX 119
             PS    + ++I+ YVTRE EP +    + +T+ S    ++ G  +S ++G  + +W  
Sbjct: 509 ICPSFSDKVNIEIQIYVTRESEPPLEEGKINKTVNSSVFPVLSGRGLSVLVGTGNNIWSG 568

Query: 120 XXXXXXXXXXXXXXXXXTRYYIYPIDHNTNEVFSYSFRSSLNMLVICIGIAMTASAAV-- 177
                              YYI P   N     S+ ++  L +L +   + +   A V  
Sbjct: 569 IYVILPVLGFVLFMDLLNIYYINPFGIN-----SWWYKGLLFVLCMVASVVIFGGAVVGF 623

Query: 178 --LWNKRLNAREGNRIQSNLGPTPTFSPHNGERELESLPHESLLQAIDVHYGERPDLKRI 235
             LW +R++  E   ++ N          NG  E +    ESL     + YG RPD K I
Sbjct: 624 WHLWERRIS--ESEELEDNQMKIGMVQHINGSMEDKESSQESLAGTSTIQYGCRPDFKEI 681

Query: 236 LFECKSS----SVGVLVCGPKKMRHEVATICSSRSADN------LHFESISFS 278
                       VGV+VCGP  ++  VA  C S++          HF S SF 
Sbjct: 682 FGSISERWGHVDVGVIVCGPPTLQASVAKECRSQNIRRRCHDPIFHFNSHSFD 734


>GSVIVT01007662001 assembled CDS
          Length = 703

 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 73/284 (25%), Positives = 123/284 (43%), Gaps = 41/284 (14%)

Query: 2   HDSLVMVSGGSGITPLISIIREVLFASTTDKCKTPQ-ITLICSFKNSXXXXXXXXXXPIS 60
           ++SL++V+GG GITP +SI++E+    ++ + + P+ I L+   K S           + 
Sbjct: 418 YESLLLVAGGVGITPFLSILQEITSTQSSIRYRFPRRIELLYIMKKSQDICLLNPILHLL 477

Query: 61  GTPSAFSNLQLKIEAYVTREKEPTINNWNLIRTIRSKPNSLIGEPV---------SAVLG 111
               A     LK++ +VT+E+E          TIR   N      V          A  G
Sbjct: 478 QNQLA-EQWHLKLKVFVTQEEECG-------ATIRDLLNEFCQVQVVNFASKCSSYAANG 529

Query: 112 GKSWLWXXXXXXXXXXXXXXXXXXXTRYYIYPIDHNTNEVFSYSFRSSLNMLVIC---IG 168
            ++ LW                      ++   D ++ E  S S+ +  ++L+IC   I 
Sbjct: 530 LENLLWMAAMAGFSSVMFLVFLSSLNHAFLPSQDKSSKEK-SPSWVA--DILLICSFIIA 586

Query: 169 IAMTASAAVLWNKRLNAREGNRIQSNLGPTPTFSPHNGERELESL--PHESLLQAIDVHY 226
           I  +   A++   R   RE           P  S   G+ + E L     + L+  ++H+
Sbjct: 587 ILCSTIVAIVLRWRKLRRE----------IPPVSQKEGKAK-EGLMDTRGTALEEHEIHF 635

Query: 227 GERPDLKRILF----ECKSSSVGVLVCGPKKMRHEVATICSSRS 266
           G RP+ + I      E + S++GVLVCGP+ M+  VA+ICS  S
Sbjct: 636 GGRPNFQDIFSKFPKETRGSNIGVLVCGPETMKESVASICSQTS 679