Jatropha Genome Database

JcCB0115521.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0115521.20 + phase: 0 /partial/short
         (38 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01004775001 assembled CDS                                        69   4e-13
GSVIVT01001275001 assembled CDS                                        67   2e-12
GSVIVT01018628001 assembled CDS                                        64   1e-11
GSVIVT01028707001 assembled CDS                                        53   3e-08
GSVIVT01009010001 assembled CDS                                        51   9e-08
GSVIVT01005878001 assembled CDS                                        48   9e-07

>GSVIVT01004775001 assembled CDS
          Length = 383

 Score = 68.9 bits (167), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 31/38 (81%), Positives = 34/38 (89%)

Query: 1   VLREGNKGYGILVSSTPKETNAFYSLRDPTEVMKFLNS 38
           VLREGN+GYGILVS  PKET AFYSL+DP EVM+FLNS
Sbjct: 328 VLREGNRGYGILVSPVPKETKAFYSLKDPAEVMEFLNS 365


>GSVIVT01001275001 assembled CDS
          Length = 406

 Score = 67.0 bits (162), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 30/38 (78%), Positives = 34/38 (89%)

Query: 1   VLREGNKGYGILVSSTPKETNAFYSLRDPTEVMKFLNS 38
           VLREGN+GYGILVS  PKET AFYSL+DP+EVM+FL S
Sbjct: 328 VLREGNRGYGILVSPVPKETKAFYSLKDPSEVMEFLKS 365


>GSVIVT01018628001 assembled CDS
          Length = 385

 Score = 63.9 bits (154), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 28/35 (80%), Positives = 32/35 (91%)

Query: 2   LREGNKGYGILVSSTPKETNAFYSLRDPTEVMKFL 36
           LR+G +GYGILVSS PKE+NAFYSLRDP EVM+FL
Sbjct: 339 LRDGKRGYGILVSSVPKESNAFYSLRDPLEVMEFL 373


>GSVIVT01028707001 assembled CDS
          Length = 353

 Score = 52.8 bits (125), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 24/36 (66%), Positives = 29/36 (80%)

Query: 1   VLREGNKGYGILVSSTPKETNAFYSLRDPTEVMKFL 36
           V+R   +GY I+VSSTPKET A YSLRDP+EV+ FL
Sbjct: 302 VIRRRGEGYPIIVSSTPKETKAAYSLRDPSEVLSFL 337


>GSVIVT01009010001 assembled CDS
          Length = 375

 Score = 51.2 bits (121), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 24/37 (64%), Positives = 29/37 (78%)

Query: 1   VLREGNKGYGILVSSTPKETNAFYSLRDPTEVMKFLN 37
           VLR   +G+GILVS  PKET+A YSL++PTEVM FL 
Sbjct: 321 VLRNRGQGFGILVSKFPKETSASYSLQEPTEVMNFLQ 357


>GSVIVT01005878001 assembled CDS
          Length = 365

 Score = 47.8 bits (112), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 21/36 (58%), Positives = 29/36 (80%)

Query: 1   VLREGNKGYGILVSSTPKETNAFYSLRDPTEVMKFL 36
           +LR+  +G+GILVS  PK+T+A YSL++P EVM FL
Sbjct: 314 ILRDRGQGFGILVSKIPKDTSASYSLQEPLEVMYFL 349