Jatropha Genome Database

JcCB0115521.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0115521.10 - phase: 0 
         (146 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01011567001 assembled CDS                                       168   1e-42
GSVIVT01034065001 assembled CDS                                        91   2e-19
GSVIVT01016435001 assembled CDS                                        88   1e-18

>GSVIVT01011567001 assembled CDS
          Length = 120

 Score =  168 bits (425), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 82/113 (72%), Positives = 94/113 (83%)

Query: 33  NMRDCLATFLALLIASNAFIGDVNAAGECGKTPIRSAAISLNPCLLAAGNAKASVPPACC 92
           NM  C A  +AL++ S AF+ + N AGECGKTPI+SAA SL+ CL AAGNAKA VPP CC
Sbjct: 4   NMPTCFAAVMALMLVSQAFVQEANGAGECGKTPIQSAAASLSSCLSAAGNAKAKVPPTCC 63

Query: 93  SKVGALINTAPKCLCAIILSPLAKQSGINPGIAITIPKRCNIKNRPAGKKCGS 145
           +KV ALINTAPKCLCA++LSPLAK++GI P IAITIPKRCNIKNRP GKKCGS
Sbjct: 64  TKVTALINTAPKCLCAVVLSPLAKKAGIKPAIAITIPKRCNIKNRPVGKKCGS 116


>GSVIVT01034065001 assembled CDS
          Length = 118

 Score = 90.9 bits (224), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 47/91 (51%), Positives = 62/91 (68%), Gaps = 1/91 (1%)

Query: 55  VNAAGECGKTPIRSAAISLNPCLLAAGNAKASVPPACCSKVGALINTAPKCLCAIILSPL 114
           V+ AG CGK+   S A+ L PC  AA +  A+V  +CC +V  +I   P CLCA++LS +
Sbjct: 25  VDGAGACGKSSPDSQALKLIPCATAASDKNAAVSSSCCLQVKKIIQN-PSCLCAVVLSNM 83

Query: 115 AKQSGINPGIAITIPKRCNIKNRPAGKKCGS 145
           AK SG+NP IAITIP+RCN  +RP G KCG+
Sbjct: 84  AKFSGVNPEIAITIPERCNFADRPVGFKCGA 114


>GSVIVT01016435001 assembled CDS
          Length = 118

 Score = 88.2 bits (217), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 47/91 (51%), Positives = 59/91 (64%), Gaps = 1/91 (1%)

Query: 55  VNAAGECGKTPIRSAAISLNPCLLAAGNAKASVPPACCSKVGALINTAPKCLCAIILSPL 114
           V+AAGECG     + A  L PC  AA N KA+   +CC +V   I   P CLCA++LS  
Sbjct: 25  VDAAGECGNASPDTEAWKLAPCEAAAQNEKAAPSKSCCLQVKK-IGQNPDCLCAVMLSNT 83

Query: 115 AKQSGINPGIAITIPKRCNIKNRPAGKKCGS 145
           AK SGI P +A+TIPKRCN+ +RP G KCG+
Sbjct: 84  AKSSGIKPEVAVTIPKRCNLADRPVGYKCGA 114