Jatropha Genome Database

JcCB0115461.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0115461.10 - phase: 0 /partial
         (340 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01003351001 assembled CDS                                       602   e-173
GSVIVT01003346001 assembled CDS                                       438   e-123

>GSVIVT01003351001 assembled CDS
          Length = 419

 Score =  602 bits (1551), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 284/340 (83%), Positives = 314/340 (92%), Gaps = 1/340 (0%)

Query: 1   MALKSFIDVHPDSHFPIQNLPYGVFKPQPSSPPRPAVAIGDYVLDLSEIALAGLFDGPIL 60
           MAL+SF++VHPDSHFPIQNLPYGVF+P PS+  RP VAIGDYVLDLS +  AGLFDGPI+
Sbjct: 1   MALQSFVEVHPDSHFPIQNLPYGVFRPGPSAEARPGVAIGDYVLDLSVVQSAGLFDGPIV 60

Query: 61  KGSDCFLQLNLNKFVAMGRPAWKEARATLQKLLSSTEPTLRDNASLRQKSLVLMSKVELL 120
             SDCFLQ NLNKF+ M RPAWKEAR+TLQKLLSSTEPTLRDNASLR+K+LV M+KVE+ 
Sbjct: 61  GKSDCFLQPNLNKFLGMRRPAWKEARSTLQKLLSSTEPTLRDNASLREKALVPMNKVEMC 120

Query: 121 VPIAIGDYTDFFSSMHHAKNCGTIFRGPQNPIPANWFHLPIAYHGRASSIVISGTDIVRP 180
           +P+ IGDY+DFFSSMHHA+NCG+IFRGP++PI ANWFHLPIAYHGRASSIVISGTD++RP
Sbjct: 121 LPMVIGDYSDFFSSMHHARNCGSIFRGPEDPIGANWFHLPIAYHGRASSIVISGTDLIRP 180

Query: 181 RGQGHPTGNSPPYFGPSMKLDFELEMAAVVGPGNELGKPVDVNEAGDHIFGLVLMNDWSA 240
           +GQGHP GNS PYFGPS KLDFELEMAA+VGPGNELGKPVDVNEA DHIFGLV+MNDWSA
Sbjct: 181 KGQGHPIGNS-PYFGPSRKLDFELEMAAIVGPGNELGKPVDVNEAADHIFGLVIMNDWSA 239

Query: 241 RDIQAWEYVPLGPFLGKSFGTTISPWIVTLDALEPFACDAPKQDPQPLPYLAEKISKNYD 300
           RDIQAWEYVPLGPFLGKSFGTT+SPWIVTLDALEPFACDAPKQDP PLPYLAEKIS+NYD
Sbjct: 240 RDIQAWEYVPLGPFLGKSFGTTLSPWIVTLDALEPFACDAPKQDPPPLPYLAEKISQNYD 299

Query: 301 ISLEVQIKPTGQEDSTVVTRSNFKHLYWTLTQQLAHHTIN 340
           ISLEV IKP G ++S +VTRSN KHLYWTLTQQLAHHTIN
Sbjct: 300 ISLEVGIKPAGHKNSCIVTRSNLKHLYWTLTQQLAHHTIN 339


>GSVIVT01003346001 assembled CDS
          Length = 8769

 Score =  438 bits (1126), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 204/239 (85%), Positives = 225/239 (94%), Gaps = 1/239 (0%)

Query: 102  DNASLRQKSLVLMSKVELLVPIAIGDYTDFFSSMHHAKNCGTIFRGPQNPIPANWFHLPI 161
            DNASLR+K+LV M+KVE+ +P+ IGDY+DFFSSMHHA+NCG+IFRGP++PI ANWFHLPI
Sbjct: 8452 DNASLREKALVPMNKVEMCLPMVIGDYSDFFSSMHHARNCGSIFRGPEDPIGANWFHLPI 8511

Query: 162  AYHGRASSIVISGTDIVRPRGQGHPTGNSPPYFGPSMKLDFELEMAAVVGPGNELGKPVD 221
            AYHGRASSIVISGTD++RP+GQGHP GNSP YFGPS KLDFELEMAA+VGPGNELGKPVD
Sbjct: 8512 AYHGRASSIVISGTDLIRPKGQGHPIGNSP-YFGPSRKLDFELEMAAIVGPGNELGKPVD 8570

Query: 222  VNEAGDHIFGLVLMNDWSARDIQAWEYVPLGPFLGKSFGTTISPWIVTLDALEPFACDAP 281
            VNEA DHIFGLV+MNDWSARDIQAWEYVPLGPFLGKSFGTT+SPWIVTLDALEPFACDAP
Sbjct: 8571 VNEAADHIFGLVIMNDWSARDIQAWEYVPLGPFLGKSFGTTLSPWIVTLDALEPFACDAP 8630

Query: 282  KQDPQPLPYLAEKISKNYDISLEVQIKPTGQEDSTVVTRSNFKHLYWTLTQQLAHHTIN 340
            KQDP PLPYLAEKIS+NYDISLEV IKP G ++S +VTRSN KHLYWTLTQQLAHHTIN
Sbjct: 8631 KQDPPPLPYLAEKISQNYDISLEVGIKPAGHKNSCIVTRSNLKHLYWTLTQQLAHHTIN 8689