Jatropha Genome Database

JcCB0115061.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0115061.10 - phase: 0 /partial
         (81 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01025739001 assembled CDS                                       124   7e-30
GSVIVT01034190001 assembled CDS                                        78   8e-16

>GSVIVT01025739001 assembled CDS
          Length = 349

 Score =  124 bits (312), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 62/80 (77%), Positives = 65/80 (81%), Gaps = 1/80 (1%)

Query: 1   TRPHATVEVEISEDMQLVHFDFNSTPFELHDDNYVLKAMKFCERPQSDDMAPNIATDGGE 60
           TRPHATVEVEISEDMQLVHFDFNSTPFELHDDNYVLKAMKFCERPQ DD+  +   D GE
Sbjct: 249 TRPHATVEVEISEDMQLVHFDFNSTPFELHDDNYVLKAMKFCERPQGDDVTHDFPAD-GE 307

Query: 61  GSSMSNMYQQQIHPSPGTST 80
           GSSM  MYQ  I  S  +ST
Sbjct: 308 GSSMPGMYQSLIPHSSRSST 327


>GSVIVT01034190001 assembled CDS
          Length = 378

 Score = 78.2 bits (191), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 34/45 (75%), Positives = 38/45 (84%)

Query: 1   TRPHATVEVEISEDMQLVHFDFNSTPFELHDDNYVLKAMKFCERP 45
           T PHATVE+EISEDMQLVHFDFNSTPF LHDD Y+LK M+  + P
Sbjct: 296 TSPHATVEIEISEDMQLVHFDFNSTPFSLHDDAYILKLMRCYQLP 340