Jatropha Genome Database

JcCB0114361.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0114361.10 - phase: 0 /pseudo
         (345 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01017738001 assembled CDS                                       145   2e-35
GSVIVT01010966001 assembled CDS                                       140   6e-34
GSVIVT01011387001 assembled CDS                                        53   2e-07
GSVIVT01017740001 assembled CDS                                        52   5e-07

>GSVIVT01017738001 assembled CDS
          Length = 744

 Score =  145 bits (367), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 95/285 (33%), Positives = 147/285 (51%), Gaps = 16/285 (5%)

Query: 19  EEGLKKIDDAMLRKKMIAEGRSVLPFTTAQNMEIYEYPSHIMPSISCCVYNLCTQKS-KN 77
           E+G + +   + + K I EG     F++   M +Y             +YN+CTQK   +
Sbjct: 12  EQGWEFMQKGITKLKNILEGLPEPQFSSEDYMMLY-----------TTIYNMCTQKPPHD 60

Query: 78  YSEEIYEKYLNYLEEWIMDKVIPRLLGKHGAALLTEVTESWSEFKAFADSSYKFVEFLDR 137
           YS+++Y+KY    EE+I   V+P L  KH   +L E+ + WS  K       +F  +LDR
Sbjct: 61  YSQQLYDKYRESFEEYITTTVLPSLREKHDEFMLRELVKRWSNHKVMVRWLSRFFHYLDR 120

Query: 138 WYVPRREYTSLVDAPRRYFCILVCDRLYGQIQEAIMSLIIQERKGKDIDRNLLKTVFGFM 197
           +++ RR   +L +     F  LV   LY ++++A++SLI QER+G+ IDR LLK V    
Sbjct: 121 YFIARRSLPALNEVGLTCFRDLVYQELYSKVRDAVISLIDQEREGEQIDRALLKNVLDIF 180

Query: 198 GPEGKGATNYYEK-FEQIMLAEAAAYYSELSMEWWFWRDSFTNYLQKVDWCLIQEGARAE 256
              G G    YE  FE  ML + AAYYS  +   W   DS  +Y+ K + CL +E  R  
Sbjct: 181 VEIGMGQMEQYENDFEAAMLKDTAAYYSRKASN-WILEDSCPDYMLKAEECLKREKDRVS 239

Query: 257 VYPYKTTKEKLLNVIKYILLERNANRWAQNQKA--QGVTADDKVD 299
            Y + +++ KLL  ++  LL   AN+  + + +    +  DDKVD
Sbjct: 240 HYLHSSSEPKLLEKVQNELLSVFANQLLEKEHSGCHALLRDDKVD 284


>GSVIVT01010966001 assembled CDS
          Length = 741

 Score =  140 bits (354), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 91/285 (31%), Positives = 151/285 (52%), Gaps = 16/285 (5%)

Query: 19  EEGLKKIDDAMLRKKMIAEGRSVLPFTTAQNMEIYEYPSHIMPSISCCVYNLCTQKS-KN 77
           + G   +   +++ K I EG     F++   M +Y             +YN+CTQK   +
Sbjct: 12  DHGWDYMQKGIIKLKKILEGLPEPQFSSEDYMMLY-----------TTIYNMCTQKPPHD 60

Query: 78  YSEEIYEKYLNYLEEWIMDKVIPRLLGKHGAALLTEVTESWSEFKAFADSSYKFVEFLDR 137
           YS+++YEKY    EE+I   V+P L  KH   +L E+ + W+  K       +F  +LDR
Sbjct: 61  YSQQLYEKYREAFEEYITVTVLPSLRDKHDEFMLRELVKRWANHKVMVKWLSRFFYYLDR 120

Query: 138 WYVPRREYTSLVDAPRRYFCILVCDRLYGQIQEAIMSLIIQERKGKDIDRNLLKTVFGFM 197
           +++ RR   +L +     F  LV   ++G++++A++SLI QER+G+ IDR LLK V    
Sbjct: 121 YFIARRSLPALNEVGLACFRELVYQEVHGRVKDAVISLIDQEREGEQIDRALLKNVLDIF 180

Query: 198 GPEGKGATNYY-EKFEQIMLAEAAAYYSELSMEWWFWRDSFTNYLQKVDWCLIQEGARAE 256
              G G  +YY + FE  ML + AAYYS  +  W   +DS  +Y+ K + CL +E  R  
Sbjct: 181 VEIGMGKMDYYADDFEADMLNDTAAYYSRKASNWVL-KDSCPDYMLKAEECLKRERDRVS 239

Query: 257 VYPYKTTKEKLLNVIKYILLERNANRWAQNQKA--QGVTADDKVD 299
            Y + +++ KL+  ++  LL   AN+  + +++    +  D+KVD
Sbjct: 240 HYLHISSEPKLVEKVQTELLVVYANQLLEKEQSGCHALLRDEKVD 284


>GSVIVT01011387001 assembled CDS
          Length = 724

 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/236 (20%), Positives = 108/236 (45%), Gaps = 13/236 (5%)

Query: 67  VYNLCTQKSKNYSEEIYEKYLNYLEEWIMDKVIPRLL-GKHGAALLTEVTESWSEFKAFA 125
            YN+   K   + E++Y   +  +   +  +VI + +    G   L E+   W++     
Sbjct: 107 AYNMVLHK---FGEKLYSGLVTTMTHHL--EVISKSIEAAQGGLFLEELNRKWADHNKAL 161

Query: 126 DSSYKFVEFLDRWYVPRREYTSLVDAPRRYF--CILVCDRLYGQIQEAIMSLIIQERKGK 183
                 + ++DR ++P    T + +     +   I+   ++  ++Q+ ++ L+++ER G+
Sbjct: 162 QMIRDILMYMDRTFIPSTHKTPVHELGLNLWRDNIIHSAKIQTRLQDTLLDLVLRERTGE 221

Query: 184 DIDRNLLKTVFGFMGPEGKGATNYYEKFEQIMLAEAAAYYSELSMEWWFWRDSFTNYLQK 243
            I+R L++ V   +     G++ Y + FE+  L  +A +Y   S ++    D    YL+K
Sbjct: 222 VINRGLMRNVIKMLM--DLGSSVYQDDFEKHFLEVSADFYRAESQQFIECCDC-GEYLKK 278

Query: 244 VDWCLIQEGARAEVYPYKTTKEKLLNVIKYILLERNANRWA--QNQKAQGVTADDK 297
            +  L +E  R   Y    ++ K+ +V++  ++E +  R    +N     +  DDK
Sbjct: 279 AERRLNEEMERVSHYLDAKSEAKITSVVEKEMVESHMQRLVHMENSGLINMLVDDK 334


>GSVIVT01017740001 assembled CDS
          Length = 161

 Score = 51.6 bits (122), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 55/112 (49%), Gaps = 11/112 (9%)

Query: 130 KFVEFLDRWYVPRREYTSLVDAPRRYFCILVCDRLYGQIQEAIMSL----------IIQE 179
           +F  +LDR+    R   SL +     F  LV   +  +++ AI S+          I +E
Sbjct: 47  RFFHYLDRYLTVLRRLPSLKETSFSCFYELVFSEVNDKVRNAIFSMFDHVGDAIFQIDRE 106

Query: 180 RKGKDIDRNLLKTVFGFMGPEGKGATNYYEK-FEQIMLAEAAAYYSELSMEW 230
            + + ID+ L+K V       G G+  +YEK FEQ ML EA A++S+ +  W
Sbjct: 107 WESEQIDQALVKNVIDLYMEMGMGSVEFYEKDFEQAMLEEATAFHSQKTSNW 158