Jatropha Genome Database

JcCB0114351.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0114351.10 + phase: 0 /pseudo
         (404 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01000729001 assembled CDS                                       556   e-159
GSVIVT01029079001 assembled CDS                                       319   1e-87
GSVIVT01035022001 assembled CDS                                        97   1e-20
GSVIVT01031225001 assembled CDS                                        94   1e-19
GSVIVT01031217001 assembled CDS                                        70   2e-12

>GSVIVT01000729001 assembled CDS
          Length = 559

 Score =  556 bits (1433), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 294/425 (69%), Positives = 331/425 (77%), Gaps = 32/425 (7%)

Query: 2   AAASFTTPKIT--SPTLQSLCKKLPLAIPFSSSFLSLP-KTLTSFPPRPLNLHHSLPNRR 58
           AA S +TP++T  SP LQ+L +  P+++  + S      KTLT  P        S   RR
Sbjct: 3   AATSLSTPRLTFSSPKLQTLYRNFPISLSLNFSSSLSHSKTLTLAPGSLSQRTSSFSPRR 62

Query: 59  HFTVRADSDNGAEPARHYDFDLFTIGAGSGGVRVSRFAASFGASVAICELPFSTISSDTT 118
            F VRA+S+NGAEP RHYDFDLFTIGAGSGGVR SRFAA+FG+SVA+CELPF+TISS+TT
Sbjct: 63  CFAVRAESENGAEP-RHYDFDLFTIGAGSGGVRASRFAANFGSSVAVCELPFATISSETT 121

Query: 119 GGFGGTCVLRGCVPKKLLVYASKYSHDLDESGGFGWKHETEPKHDWSTLMANKNAELQRL 178
           GG GGTCVLRGCVPKKLLVYASK+SH+ DESGGFGWK E EPKHDWSTLMANKNAELQRL
Sbjct: 122 GGVGGTCVLRGCVPKKLLVYASKFSHEFDESGGFGWKFEAEPKHDWSTLMANKNAELQRL 181

Query: 179 TGIYKNMLNNAGVTLIEGRGKIVDPHTVDVDGKLYSARHIVISVGGRPFIPEIPGSEYVI 238
           TGIYKN+L NAGVTLIEGRGKIVDPHTVDVDGKLY+ARHI+I+VGGRPFIPEIPGSE+ I
Sbjct: 182 TGIYKNILKNAGVTLIEGRGKIVDPHTVDVDGKLYTARHILIAVGGRPFIPEIPGSEHAI 241

Query: 239 DSDAALDLPSKPEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVLRGFDEEV----- 293
           DSD ALDLPSKP+KI IVGGGYIALEFAGIFNGL +DVHVFIRQKKVLRGFDE+V     
Sbjct: 242 DSDVALDLPSKPKKIGIVGGGYIALEFAGIFNGLNTDVHVFIRQKKVLRGFDEDVRDFVA 301

Query: 294 --MKCELLQ*FS*YMLSDFPCN*F-----*MCLYTCR------SEILL------HKKNLG 334
             M    ++    +   + P          + L T +      S I+       + KNLG
Sbjct: 302 EQMSLRGIE----FHTEESPQAILKSADGSLSLKTNKGTVEGFSHIMFATGRRPNTKNLG 357

Query: 335 LEKVGVKMTKNGAIEVDEYSCTSVPSIWAVGDVTDRVNLTPVALMEGGALAKTLFLNEPT 394
           LE VGVKMTK GAIEVDE+S TSVPSIWAVGDVTDR+NLTPVALMEGGALAKTLF NEPT
Sbjct: 358 LETVGVKMTKTGAIEVDEFSRTSVPSIWAVGDVTDRINLTPVALMEGGALAKTLFGNEPT 417

Query: 395 KPNYR 399
           KP+YR
Sbjct: 418 KPDYR 422


>GSVIVT01029079001 assembled CDS
          Length = 496

 Score =  319 bits (818), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 172/353 (48%), Positives = 230/353 (65%), Gaps = 24/353 (6%)

Query: 71  EPARHYDFDLFTIGAGSGGVRVSRFAASFGASVAICELPFSTISSDTTGGFGGTCVLRGC 130
           E   HYDFDLF IGAGSGGVR +RF+A+FGA VAICELPF  +SS+  GG GGTCV+RGC
Sbjct: 16  EEETHYDFDLFVIGAGSGGVRAARFSANFGAKVAICELPFHPVSSEVIGGVGGTCVIRGC 75

Query: 131 VPKKLLVYASKYSHDLDESGGFGWKHETEPKHDWSTLMANKNAELQRLTGIYKNMLNNAG 190
           VPKK+LVY + +  +++++  +GW+   +   +W  L+  K  E+ RL GIYK +L NAG
Sbjct: 76  VPKKILVYGASFRGEIEDAKNYGWELNDKVDFNWKKLLHKKTEEIVRLNGIYKRLLTNAG 135

Query: 191 VTLIEGRGKIVDPHTVDV---DG-KL-YSARHIVISVGGRPFIPEIPGSEYVIDSDAALD 245
           V L EG GKIV P+ V+V   DG KL YSA+HI+I+ G R   P IPG E  I SD AL 
Sbjct: 136 VKLYEGEGKIVGPNEVEVTQLDGTKLCYSAKHILIATGSRAQRPTIPGQELSITSDEALS 195

Query: 246 LPSKPEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVLRGFDEEV-------MKCEL 298
           L   P++  I+GGGYIA+EFA I+NG+   V +F R++  LRGFD+E+       ++   
Sbjct: 196 LDELPKRAVILGGGYIAVEFASIWNGMGVAVDLFFRKELPLRGFDDEMRAVVARNLEARG 255

Query: 299 LQ*FS*YMLSDFPCN*F*MCLYTCRSEILL------------HKKNLGLEKVGVKMTKNG 346
           +       LS+       + + T   E L             + K L LE VGV++ K G
Sbjct: 256 INLHPRTTLSELVKTEDGIKVITDHGEELTADVVLFATGRAPNTKRLNLEVVGVELDKMG 315

Query: 347 AIEVDEYSCTSVPSIWAVGDVTDRVNLTPVALMEGGALAKTLFLNEPTKPNYR 399
           A++VDEYS T++PSIWA+GDVT+R+NLTPVALMEG   AKT+F  +P+KP+Y+
Sbjct: 316 AVKVDEYSRTNIPSIWAIGDVTNRMNLTPVALMEGTYFAKTVFGGQPSKPDYK 368


>GSVIVT01035022001 assembled CDS
          Length = 571

 Score = 97.4 bits (241), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 84/242 (34%), Positives = 120/242 (49%), Gaps = 26/242 (10%)

Query: 66  SDNGAEPARHYDFDLFTIGAGSGGVRVSRFAASFGASVAICELPFSTISSDTTGGFGGTC 125
           SDNG+ P + +D+DL  IGAG GG   +  A   G   AI E        D  GG   TC
Sbjct: 74  SDNGSAP-KAFDYDLVIIGAGVGGHGAALHAVEKGLKTAIIE-------GDVVGG---TC 122

Query: 126 VLRGCVPKKLLVYASKYSHDLDES---GGFGWKHETEPKHDWSTLMANKNAELQRLTGIY 182
           V RGCVP K L+  S    +L         G +  +   +D   +  + N    ++    
Sbjct: 123 VNRGCVPSKALLAVSGRMRELQSEHHLKALGLQ-VSAAGYDRQGVADHANNLASKIRNNL 181

Query: 183 KNMLNNAGVTLIEGRGKIVDPHTVDVDGKL------YSARHIVISVGGRPFIP---EIPG 233
            N +   GV ++ G G I+ P  V   GK+       +A++I+I+ G  PF+P   E+ G
Sbjct: 182 TNSMKALGVDILTGVGTILGPQKVKY-GKVGFSENVITAKNIIIATGSVPFVPKGIEVDG 240

Query: 234 SEYVIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVLRGFDEEV 293
            + VI SD AL L S P+ IAIVG GYI LEF+ ++  L S+V       +++ GFD E+
Sbjct: 241 -KTVITSDHALKLESVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEI 299

Query: 294 MK 295
            K
Sbjct: 300 GK 301


>GSVIVT01031225001 assembled CDS
          Length = 588

 Score = 94.0 bits (232), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 82/251 (32%), Positives = 116/251 (46%), Gaps = 23/251 (9%)

Query: 56  NRRHFTVRADSDNGAEPARHYDFDLFTIGAGSGGVRVSRFAASFGASVAICELPFSTISS 115
           NR      A +      +  +D++L  IGAG GG   +  A   G   AI E        
Sbjct: 57  NRWKVVSAAVAPQNGSASDEFDYNLVIIGAGVGGHGAALHAVEKGWKTAIIE-------G 109

Query: 116 DTTGGFGGTCVLRGCVPKKLLVYASKYSHDLDES---GGFGWKHETEPKHDWSTLMANKN 172
           D  GG   TCV RGCVP K L+  S    DL +      FG +      +D   +  + N
Sbjct: 110 DVVGG---TCVNRGCVPSKALLAVSGRMRDLQDEHHMKAFGLQ-VAAAGYDRQGVADHAN 165

Query: 173 AELQRLTGIYKNMLNNAGVTLIEGRGKIVDPHTVDV-----DGKLYSARHIVISVGGRPF 227
               ++     N L   GV ++EG G I+ P  V        G + +A+ I+I+ G   F
Sbjct: 166 NLASKIRSNLTNSLKGLGVDILEGVGTILGPQKVKYGKVGSSGNVITAKDIIIATGSVSF 225

Query: 228 IP---EIPGSEYVIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKK 284
           +P   E+ G + VI SD AL L   P+ IAIVG GYI LEF+ ++  L S+V       +
Sbjct: 226 VPKGVEVDG-KTVITSDQALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFVEALDQ 284

Query: 285 VLRGFDEEVMK 295
           ++ GFD E+ K
Sbjct: 285 LMPGFDPEIGK 295


>GSVIVT01031217001 assembled CDS
          Length = 187

 Score = 69.7 bits (169), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 47/121 (38%), Positives = 65/121 (53%), Gaps = 11/121 (9%)

Query: 184 NMLNNAGVTLIEGRGKIVDPHTVDV-----DGKLYSARHIVISVGGRPFIP---EIPGSE 235
           N L   GV ++EG G I+ P  V        G + +A+ I+I+ G  PF+P   E+ G +
Sbjct: 44  NSLKGLGVVILEGVGTILGPQKVKYGKVGSSGNVITAKDIIIATGSVPFVPKGVEVDG-K 102

Query: 236 YVIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVLRGFDEEVMK 295
            VI SD AL L   P+ IAIVG GYI LEF+ ++  L S+     R+K    GF+  V K
Sbjct: 103 TVITSDQALKLEFIPDWIAIVGSGYIGLEFSDVYMALGSEPQA--REKAEKEGFEVSVAK 160

Query: 296 C 296
            
Sbjct: 161 T 161