Jatropha Genome Database

JcCB0113601.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0113601.10 + phase: 0 
         (269 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01025127001 assembled CDS                                       385   e-107
GSVIVT01021828001 assembled CDS                                       102   3e-22
GSVIVT01037941001 assembled CDS                                        98   4e-21

>GSVIVT01025127001 assembled CDS
          Length = 322

 Score =  385 bits (988), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 199/272 (73%), Positives = 230/272 (84%), Gaps = 6/272 (2%)

Query: 1   MAIPCQPLIGSEKLSMEAGPLSPMAPISQPP--VILTQDELKKIAAYKAVDFVQSGMVLG 58
           MAI     IGS+K +ME G +S  +  S     VILTQDELKKIAAYKAV++V+SGMVLG
Sbjct: 19  MAIAYPHFIGSQKSAMETGMISSPSSSSPSRPPVILTQDELKKIAAYKAVEYVESGMVLG 78

Query: 59  LGTGSTAKHAVDRIADLLHQGKLKNIIGIPTSKKTHQQALSLGIPLSDLDSHPNVDLAID 118
           LGTGSTAKHAVDRI +LL QGKLKNI+GIPTSK TH+QA+SLGIPLSDLDS+P +DLAID
Sbjct: 79  LGTGSTAKHAVDRIGELLRQGKLKNIVGIPTSKMTHEQAVSLGIPLSDLDSYPILDLAID 138

Query: 119 GADEVDSDLNLVKGRGGSLLREKMIESACKKFVVIVDESKLVPHIGANG-AMPVEVVPFC 177
           GADEVD  LNLVKGRGGSLLREKM+E ACKKFVVIVDESKLV ++G +G AMPVE+VPFC
Sbjct: 139 GADEVDPYLNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVNYLGGSGLAMPVEIVPFC 198

Query: 178 WKFTQERLQEMFGYADCLAKLRRNGDSESGEPFVTDNGNYIVDLFFKKDIGDLKAASDAI 237
           WKFT +RLQ +F  + C+AKLR     ++GEPFVTDN NYIVDL+FK++IGDLK ASDAI
Sbjct: 199 WKFTAQRLQMLFEESGCVAKLRTY---QNGEPFVTDNMNYIVDLYFKREIGDLKVASDAI 255

Query: 238 LRLAGVVEHGMFLGMATTVIVAGEFGVTMKNK 269
           LRLAGVVEHGMF+ MATT+IVAGE GV +K+K
Sbjct: 256 LRLAGVVEHGMFIDMATTLIVAGECGVIVKDK 287


>GSVIVT01021828001 assembled CDS
          Length = 198

 Score =  102 bits (253), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 55/96 (57%), Positives = 69/96 (71%), Gaps = 2/96 (2%)

Query: 11  SEKLSMEAGPLSPMAPISQPPVILTQDELKKIAAYKAVDFVQSGMVLGLGTGSTAKHAVD 70
           S  L+    PL  +   S P   LTQD+LKK+AA KAVD+V+SGMVLGLGTGSTA   V 
Sbjct: 58  SSTLTPRTRPLLSIRAFSAPA--LTQDDLKKLAADKAVDYVKSGMVLGLGTGSTAAFVVA 115

Query: 71  RIADLLHQGKLKNIIGIPTSKKTHQQALSLGIPLSD 106
           ++  LL  G+L +I+G+PTSK+T +QALSLGIPLS 
Sbjct: 116 KLGHLLKTGQLSDIVGVPTSKRTEEQALSLGIPLSQ 151


>GSVIVT01037941001 assembled CDS
          Length = 294

 Score = 97.8 bits (242), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 73/235 (31%), Positives = 116/235 (49%), Gaps = 18/235 (7%)

Query: 43  AAYKAVD-FVQSGMVLGLGTGSTAKHAVDRIADLLHQGKLKNIIGIPTSKKTHQQALSLG 101
           AA   VD +++SGMV+GLG+G  +  A+  +   L  G LK+I GIP S  +  +A  +G
Sbjct: 53  AAKHTVDTYIKSGMVIGLGSGHASDMAIQYLGRQLRTGALKDITGIPMSVASASEAAKVG 112

Query: 102 IPLSDLDSHPNVDLAIDGADEVDS-DLNLVKGR-----GGSLLREKMIESACKKFVVIVD 155
           IPL        +D A D AD ++   L  + GR       S+++EK I  A  K V I+ 
Sbjct: 113 IPLGHYQDCSQIDFAFDDADVIEEGTLVAIIGRRRLQGNESIIQEKSILKAADKLVFIIQ 172

Query: 156 ESKLVPHIGANGAMPVEVVPFCWKFTQERLQEMF-GYADCLAKLRRNGDSESGE-----P 209
           E +    +   G +PV V    W  T E + ++F G A+     RR     +G      P
Sbjct: 173 EKQYKCDL--EGLIPVLVQSLNWMETAEEIDDLFLGDAEV---WRRPSIGHAGPLGGDFP 227

Query: 210 FVTDNGNYIVDLFFKKDIGDLKAASDAILRLAGVVEHGMFLGMATTVIVAGEFGV 264
            VT  G+ I+D+ F   I  L   ++++ ++ GVVEHG+   +    ++  + G+
Sbjct: 228 LVTSEGHNILDVIFTSPILKLAEVAESLDKIDGVVEHGVISKIPCIAVITSDSGM 282