Jatropha Genome Database

JcCB0113371.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0113371.20 - phase: 0 /partial
         (197 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01036631001 assembled CDS                                       293   5e-80
GSVIVT01036611001 assembled CDS                                       290   3e-79
GSVIVT01036616001 assembled CDS                                        70   6e-13

>GSVIVT01036631001 assembled CDS
          Length = 613

 Score =  293 bits (749), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 143/196 (72%), Positives = 159/196 (81%), Gaps = 7/196 (3%)

Query: 1   NALTDPQRVRTPSITEYWKPLAEDMDPSAGIEAEYHHKNNRVYCWKGLRFSARQDLDGFS 60
           NALTDPQRVRTP+++EYWKPLAEDMD SAGIEAEYHHKNNRVYCWKGLRF+ARQDLDGFS
Sbjct: 424 NALTDPQRVRTPAVSEYWKPLAEDMDSSAGIEAEYHHKNNRVYCWKGLRFAARQDLDGFS 483

Query: 61  RFTDHGIEGVVPLELLPPDVRSKYQAKPNDRSKRAKKEEVKGASNQAEDNQITTPASVLD 120
           RFT++GIEGVVP+ELLP DVRSKYQAKP+DRSKRAKKEE KGA+ QAE+NQI TPAS +D
Sbjct: 484 RFTEYGIEGVVPMELLPSDVRSKYQAKPSDRSKRAKKEETKGAAQQAEENQIATPASEID 543

Query: 121 GEGIRTDEXXXXXXXXXXXXXXXXXXQGGTPTPEEHQKQSPDTDGGQEAGQLEADGEGDA 180
           GEG R D                      TPT +E+QKQS DTD GQEAGQ EAD E +A
Sbjct: 544 GEGTRVD-------LEASAAPMDTDVTATTPTADENQKQSSDTDAGQEAGQSEADAEAEA 596

Query: 181 ALIDGETDAEVDLEAV 196
            +IDGETDAEVDL+AV
Sbjct: 597 GMIDGETDAEVDLDAV 612


>GSVIVT01036611001 assembled CDS
          Length = 613

 Score =  290 bits (742), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 142/196 (72%), Positives = 158/196 (80%), Gaps = 7/196 (3%)

Query: 1   NALTDPQRVRTPSITEYWKPLAEDMDPSAGIEAEYHHKNNRVYCWKGLRFSARQDLDGFS 60
           NALTDPQR RTP+++EYWKPLAEDMD SAGIEAEYHHKNNRVYCWKGLRF+ARQDLDGFS
Sbjct: 424 NALTDPQRARTPAVSEYWKPLAEDMDLSAGIEAEYHHKNNRVYCWKGLRFAARQDLDGFS 483

Query: 61  RFTDHGIEGVVPLELLPPDVRSKYQAKPNDRSKRAKKEEVKGASNQAEDNQITTPASVLD 120
           RFT++GIEGVVP+ELLP DVRSKYQAKP+DRSKRAKKEE KGA+ QAE+NQI TPAS +D
Sbjct: 484 RFTEYGIEGVVPMELLPSDVRSKYQAKPSDRSKRAKKEETKGAAQQAEENQIATPASEID 543

Query: 121 GEGIRTDEXXXXXXXXXXXXXXXXXXQGGTPTPEEHQKQSPDTDGGQEAGQLEADGEGDA 180
           GEG R D                      TPT +E+QKQS DTD GQEAGQ EAD E +A
Sbjct: 544 GEGTRVD-------LEASAAPMDTDVTATTPTADENQKQSSDTDAGQEAGQSEADAEAEA 596

Query: 181 ALIDGETDAEVDLEAV 196
            +IDGETDAEVDL+AV
Sbjct: 597 GMIDGETDAEVDLDAV 612


>GSVIVT01036616001 assembled CDS
          Length = 118

 Score = 70.1 bits (170), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 35/47 (74%), Positives = 40/47 (85%)

Query: 150 TPTPEEHQKQSPDTDGGQEAGQLEADGEGDAALIDGETDAEVDLEAV 196
           TPT +E+QKQS DTD GQEAGQ EAD E +A +IDGETDAEVDL+AV
Sbjct: 71  TPTADENQKQSSDTDAGQEAGQSEADAEAEAGMIDGETDAEVDLDAV 117