Jatropha Genome Database

JcCB0113371.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0113371.10 + phase: 2 /partial
         (182 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01036607001 assembled CDS                                       317   2e-87
GSVIVT01028667001 assembled CDS                                       306   4e-84

>GSVIVT01036607001 assembled CDS
          Length = 190

 Score =  317 bits (811), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 149/160 (93%), Positives = 153/160 (95%)

Query: 14  VSNGHVKRPHDEDIQSNVLEIVGSNIQSTYITCPVDPAATLGIKLPFLVMIVKNLKKYFT 73
           V NG +KR  DEDI SNVLEIVGSN+QSTYITCP DPAATLGIKLPFLVMIVKNLKKYFT
Sbjct: 29  VVNGQIKRTQDEDIHSNVLEIVGSNVQSTYITCPADPAATLGIKLPFLVMIVKNLKKYFT 88

Query: 74  FEIQVLDDKNVRRRFRASNFQAITRVKPYICTMPLKMDEGWNQIQLNLADFTRRAYGTNY 133
           FEIQVLDDKNVRRRFRASNFQA+TRVKPYICTMPL+MDEGWN IQLNLADFTRRAYGTNY
Sbjct: 89  FEIQVLDDKNVRRRFRASNFQAVTRVKPYICTMPLRMDEGWNTIQLNLADFTRRAYGTNY 148

Query: 134 VETLRVQVHANCRLRRIYFSDRLYSEEELPPEFKLYLPMQ 173
           VETLRVQVHANCRLRRIYFSDRLYSEEELPPEFKLYLPMQ
Sbjct: 149 VETLRVQVHANCRLRRIYFSDRLYSEEELPPEFKLYLPMQ 188


>GSVIVT01028667001 assembled CDS
          Length = 224

 Score =  306 bits (783), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 144/161 (89%), Positives = 150/161 (93%)

Query: 14  VSNGHVKRPHDEDIQSNVLEIVGSNIQSTYITCPVDPAATLGIKLPFLVMIVKNLKKYFT 73
           V NG +KR  DEDI SNVLEIVG N+QSTYITCP DPAATLGIKLP LVMIVKNLKKYFT
Sbjct: 29  VVNGQIKRTQDEDIHSNVLEIVGLNVQSTYITCPADPAATLGIKLPVLVMIVKNLKKYFT 88

Query: 74  FEIQVLDDKNVRRRFRASNFQAITRVKPYICTMPLKMDEGWNQIQLNLADFTRRAYGTNY 133
            EIQVLDDKNVRRRF ASNFQA+TRVKPYICTMPL+MDEGWN IQLNLADFTRRAYGTNY
Sbjct: 89  LEIQVLDDKNVRRRFCASNFQAVTRVKPYICTMPLRMDEGWNTIQLNLADFTRRAYGTNY 148

Query: 134 VETLRVQVHANCRLRRIYFSDRLYSEEELPPEFKLYLPMQV 174
           VETLRV+VHANCRLRRIYFSDRLYSEEELPPEFKLYLPMQ+
Sbjct: 149 VETLRVKVHANCRLRRIYFSDRLYSEEELPPEFKLYLPMQI 189