Jatropha Genome Database

JcCB0112721.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0112721.10 - phase: 0 /pseudo
         (329 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01027606001 assembled CDS                                       404   e-113

>GSVIVT01027606001 assembled CDS
          Length = 449

 Score =  404 bits (1038), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 203/300 (67%), Positives = 230/300 (76%), Gaps = 3/300 (1%)

Query: 1   MDPVLPIAVLSVLLGALIAFLFFKSYSHKRESEIKSITKPELDSAPKKPTKPAQPVTXXX 60
           MDPVL  AV+S+LLGALIA +F  +Y  KR SE++SI KPEL S   K  KPA+P     
Sbjct: 1   MDPVLLAAVVSILLGALIALVFLGNYFLKRRSEVESIFKPELQS--DKNPKPAKPPQSFS 58

Query: 61  XXXXXXXXXXASDKDQIKRHHPLDLNTLKGHGDSVNGLCFSNDGRSLATACGDGVVRVFK 120
                     A+DKDQ KRHHPLD+NTLKGHGDSVNGLCFS DGR+LATAC DGVVRV+K
Sbjct: 59  KKSQFKHHSHAADKDQNKRHHPLDINTLKGHGDSVNGLCFSPDGRNLATACADGVVRVYK 118

Query: 121 LDDASSKSFKFLRISVPAGGHPXXXXXXXXXXXXXXXXQTLSGASLYMFGEEKVK-PNES 179
           LDDASSKSFKFLRI+VP GGHP                QTLSG SL+MFG+E+ K  NE+
Sbjct: 119 LDDASSKSFKFLRINVPLGGHPTAVTFGDDSSSVVVASQTLSGCSLFMFGDERAKTANET 178

Query: 180 KQQSKLPLPEVKWEHHKIHDKNAVLTLVGTAATYGTADGSAIVASCSEATDIKLWYGRTG 239
           KQ +K P+PE+KWE  K+HDK A+LTL GT A+YG+ADGS I+ SCSE TDI LW+G+TG
Sbjct: 179 KQPAKPPVPEIKWERLKVHDKRAILTLFGTTASYGSADGSTIIVSCSEGTDIMLWHGKTG 238

Query: 240 KILGNVDTNQLKNTMATVSPNGRFIAAAAFTADVKVWEIVYSKDGSVKEVPKVMQLKGHK 299
           K LG+VDTNQLKN MA VSPNGRFIAAAAFTADVKVWEIVYSKDGSVKEV  VMQLKGHK
Sbjct: 239 KNLGHVDTNQLKNNMAAVSPNGRFIAAAAFTADVKVWEIVYSKDGSVKEVSNVMQLKGHK 298