Jatropha Genome Database

JcCB0112461.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0112461.20 - phase: 1 /partial
         (150 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01031907001 assembled CDS                                        71   2e-13

>GSVIVT01031907001 assembled CDS
          Length = 529

 Score = 70.9 bits (172), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/95 (53%), Positives = 65/95 (68%), Gaps = 10/95 (10%)

Query: 54  ILAPEEEQQHTEAKPRPLSPYAIYDDLKPPTSPIPAAPLVSIPTSS-ENGGPKAGN---- 108
           +LA E  Q+  + K RPLSPY +YDDLKPPTSP P+AP VS+P++    GG K  N    
Sbjct: 426 VLAKEAIQEEAK-KTRPLSPYIVYDDLKPPTSPSPSAPTVSLPSTLPMEGGSKIDNISGN 484

Query: 109 --SAPPTA--PEDMQQHTEAKPKPLSPFSMYEDMK 139
             + PP A  P+D Q H +AKP+PLSPF+MYED+K
Sbjct: 485 NTAQPPAADIPKDEQHHVQAKPRPLSPFTMYEDLK 519



 Score = 53.5 bits (127), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 22/33 (66%), Positives = 29/33 (87%)

Query: 57  PEEEQQHTEAKPRPLSPYAIYDDLKPPTSPIPA 89
           P++EQ H +AKPRPLSP+ +Y+DLKPPTSP P+
Sbjct: 495 PKDEQHHVQAKPRPLSPFTMYEDLKPPTSPSPS 527