Jatropha Genome Database

JcCB0112461.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0112461.10 - phase: 0 /partial
         (201 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01031905001 assembled CDS                                       326   4e-90
GSVIVT01001439001 assembled CDS                                       117   3e-27
GSVIVT01017672001 assembled CDS                                       102   9e-23
GSVIVT01020986001 assembled CDS                                        77   6e-15
GSVIVT01030921001 assembled CDS                                        60   6e-10
GSVIVT01011790001 assembled CDS                                        57   5e-09

>GSVIVT01031905001 assembled CDS
          Length = 259

 Score =  326 bits (836), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 152/200 (76%), Positives = 172/200 (86%), Gaps = 2/200 (1%)

Query: 2   ESDKHNVTPSTALAYLDPNYWNDRFSKEEHFEWFKDYSHFRHLIQAHITTNASMKVLELG 61
           E+ K +  PST  AYLDP+YW++RFS EEH+EW KDYSHF HLIQ H+  N S  VLE+G
Sbjct: 13  ETQKRSFAPSTVSAYLDPHYWDERFSDEEHYEWLKDYSHFSHLIQPHLQPNYS--VLEIG 70

Query: 62  CGNSQLCEEIYKDGITDITCIDLSAVAVEKMRQRLSVKGYKEIKVLEADMLDLPFSDKCF 121
           CGNSQL EE+YK GIT+ITCIDLSA+AVEKM++RL  KGYKEIKVLEADMLDLPFS++CF
Sbjct: 71  CGNSQLSEELYKGGITEITCIDLSAIAVEKMQKRLLSKGYKEIKVLEADMLDLPFSNECF 130

Query: 122 DVVIEKGTMDVLFVNSGDPWNPRPTTVAQVKAMLDGVHRVLKPDGIFISISFGQPHFRRP 181
           DVVIEKGTMDVLFV+SGDPWNP P TV +  A L GVHRVLKPDG+FISISFGQPHFRRP
Sbjct: 131 DVVIEKGTMDVLFVDSGDPWNPLPETVNKAMATLQGVHRVLKPDGVFISISFGQPHFRRP 190

Query: 182 LFNAPEFTWSVEWNTFGDGF 201
           LF AP+FTWS EW+TFGDGF
Sbjct: 191 LFEAPDFTWSFEWSTFGDGF 210


>GSVIVT01001439001 assembled CDS
          Length = 253

 Score =  117 bits (294), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 64/189 (33%), Positives = 109/189 (57%), Gaps = 14/189 (7%)

Query: 6   HNVTPSTALAYLDPNYWNDRFSKEE-HFEWFKDYSHFRHLIQAHITTNASMKVLELGCGN 64
            +V+   +  Y D  YW+ R+ +E   F+W++ YS  R  ++ +I T++  +VL +GCGN
Sbjct: 3   RDVSSCNSYNYGDALYWDARYIQEAGSFDWYQRYSALRPFVRRYIPTSS--RVLMVGCGN 60

Query: 65  SQLCEEIYKDGITDITCIDLSAVAVEKMRQRLSVKGYKEIKVLEADMLDLP-FSDKCFDV 123
           + + E++ KDG  +I  ID+S+VA+E MR++   +   +++ ++ D+ D+  F D+ FD 
Sbjct: 61  AVMSEDMVKDGYEEIMNIDISSVAIEMMRRKH--EHIHQLQYMQMDVKDMSFFPDESFDC 118

Query: 124 VIEKGTMDVLFVNSGDPWNPRPTTVAQVKAMLDGVHRVLKPDGIFISISFGQPHFRRPLF 183
           VI+KGT+D L   +  P +           ML  V R+LKP GI++ I++G P  R P  
Sbjct: 119 VIDKGTLDSLMCGTDAPIS--------ASRMLGEVSRLLKPGGIYMLITYGDPTVRMPHL 170

Query: 184 NAPEFTWSV 192
             P + W V
Sbjct: 171 GRPVYNWKV 179


>GSVIVT01017672001 assembled CDS
          Length = 230

 Score =  102 bits (255), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 60/184 (32%), Positives = 104/184 (56%), Gaps = 15/184 (8%)

Query: 12  TALAYLDPNYWNDRFSKEEH-FEWFKDYSHFRHLIQAHITTNASMKVLELGCGNSQLCEE 70
           T  AY +P+YW++R+S E   F+W++ Y+    L+  +I  +   +VL +GCGNS   E 
Sbjct: 6   TMQAYGEPSYWDERYSHESGPFDWYQKYNALAPLLHLYIPLHH--RVLVVGCGNSAFSEG 63

Query: 71  IYKDGITDITCIDLSAVAVEKMRQRLSVKGYKEIKVLEADMLDLP-FSDKCFDVVIEKGT 129
           +  DG  ++  ID+S+V ++ M+++ S +   ++K +  D+LD+  F    FD V++KGT
Sbjct: 64  MVNDGYKEVVNIDISSVVIQAMQRKYSDR--PQLKYIRMDVLDMSGFQTGSFDAVVDKGT 121

Query: 130 MDVLFVNSGDPWNPRPTTVAQVKAMLDGVHRVLKPDGIFISISFGQPHFRRPLFNAPEFT 189
           +D L   +    N R   V     ML  V RVLK  G+++ I++G P +R  L      +
Sbjct: 122 LDSLLCGN----NSRQLAV----KMLKEVERVLKNKGVYMLITYGAPIYRLRLLR-DSCS 172

Query: 190 WSVE 193
           W+++
Sbjct: 173 WTIK 176


>GSVIVT01020986001 assembled CDS
          Length = 748

 Score = 77.0 bits (188), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 50/190 (26%), Positives = 89/190 (46%), Gaps = 29/190 (15%)

Query: 22  WNDRFS---KEEHFEWFKDYSHFRHLIQAHITTNA---------------SMKVLELGCG 63
           W+  F+    ++ FEW+ ++   +  + +H+++ A                +++L  GCG
Sbjct: 24  WDKFFTIRGSDDSFEWYAEWPQLKDPLLSHLSSTAPPSDPASEPPQPPPPPLQILVPGCG 83

Query: 64  NSQLCEEIYKDGITDITCIDLSAVAVEKMRQRLSVKGYKEIKVLEADMLDLPFSDKCFDV 123
           NS+L E +Y  G   IT +D S V +  M +R +V+   +++    D+  + F D  FD 
Sbjct: 84  NSRLSEHLYDAGFHGITNVDFSKVVISDMLRR-NVRSRPDMRWRVMDITSMQFPDGSFDA 142

Query: 124 VIEKGTMDVLFVNSGDPWNPRPTTVAQVKAM-LDGVHRVLKPDGIFISISFGQPHFRRPL 182
           +++KG +D L           P    ++  M L  V RVLK  G FI ++  + H    L
Sbjct: 143 ILDKGGLDALM---------EPELGPKLGKMYLTEVKRVLKSGGKFIGLTLAESHVLGLL 193

Query: 183 FNAPEFTWSV 192
           F+   F W +
Sbjct: 194 FSKFRFGWKM 203


>GSVIVT01030921001 assembled CDS
          Length = 340

 Score = 60.1 bits (144), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 38/122 (31%), Positives = 64/122 (52%), Gaps = 13/122 (10%)

Query: 53  ASMKVLELGCGNSQLCEEIYKDGITDITCIDLSAVAVEKMRQRLSVKGYKEIKVLEADML 112
           +S  VL++G GN  L +E+ K G +D+T  D S  A++  R      G+  I  L  D+L
Sbjct: 159 SSWSVLDIGTGNGLLLQELAKQGFSDLTGTDYSEGAIDLARSLADRDGFTYINFLVDDVL 218

Query: 113 DLPFSDKCFDVVIEKGTMDVLFVNSGDPWNPRPTTVAQVKAML--DGVHRVLKPDGIFIS 170
           +    ++ F +VI+KGT+D + ++   P          +K ++  D V R++ P GIF+ 
Sbjct: 219 ESKL-ERQFQLVIDKGTLDAIGLHPDGP----------IKRIMYWDSVSRLVAPGGIFVV 267

Query: 171 IS 172
            S
Sbjct: 268 TS 269


>GSVIVT01011790001 assembled CDS
          Length = 455

 Score = 57.0 bits (136), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 63/122 (51%), Gaps = 13/122 (10%)

Query: 53  ASMKVLELGCGNSQLCEEIYKDGITDITCIDLSAVAVEKMRQRLSVKGYKEIKVLEADML 112
           A  +VL++G GN  L +E+ K G +D+T ID S  A+   +      G+  I  L  D L
Sbjct: 276 ARWRVLDVGIGNGLLLQELAKQGFSDLTGIDYSEGAINLAQNLADRDGFTSINFLVDDNL 335

Query: 113 DLPFSDKCFDVVIEKGTMDVLFVNSGDPWNPRPTTVAQVKAML--DGVHRVLKPDGIFIS 170
           +    ++ F +V++KGT+D + ++  DP          +K ++  D + R++ P GI + 
Sbjct: 336 ETKL-ERQFQLVMDKGTLDAIGLHPDDP----------IKRIMYWDSISRLVVPGGILVI 384

Query: 171 IS 172
            S
Sbjct: 385 TS 386