Jatropha Genome Database

JcCB0111501.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0111501.20 + phase: 0 /pseudo
         (151 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01031955001 assembled CDS                                       267   1e-72

>GSVIVT01031955001 assembled CDS
          Length = 887

 Score =  267 bits (683), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 137/145 (94%), Positives = 144/145 (99%)

Query: 1   MAQPLIKKDDDRDDEAEFSPFLGIEKGAVLQEARVFNDPQLDPRKCSQVITKLLYLLNQG 60
           MAQPL+KKDDDRDDEA++SPFLGIEKGAVLQEARVFNDPQL+PR+CSQVITKLLYLLNQG
Sbjct: 1   MAQPLVKKDDDRDDEADYSPFLGIEKGAVLQEARVFNDPQLEPRRCSQVITKLLYLLNQG 60

Query: 61  ETFTKVEATEVFFAVTKLFQSRDIGLRRMVYLMIKELSPSADEVIIVTSSLMKDMNSKSD 120
           ETFTK+EATEVFFAVTKLFQSRD GLRRMVYLMIKELSPSADEVIIVTSSLMKDMNSK+D
Sbjct: 61  ETFTKIEATEVFFAVTKLFQSRDTGLRRMVYLMIKELSPSADEVIIVTSSLMKDMNSKTD 120

Query: 121 MYRANAIRVLCRITDGTLLTQIERY 145
           MYRANAIRVLCRITDGTLLTQIERY
Sbjct: 121 MYRANAIRVLCRITDGTLLTQIERY 145