Jatropha Genome Database

JcCB0111121.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0111121.10 - phase: 0 /partial
         (163 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01015151001 assembled CDS                                       220   2e-58
GSVIVT01008148001 assembled CDS                                        60   4e-10

>GSVIVT01015151001 assembled CDS
          Length = 280

 Score =  220 bits (561), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 100/116 (86%), Positives = 105/116 (90%)

Query: 1   MVWFQCEDCGENLKKPKLPNHFRICSASKLSCIDCGEMFGQDSVQGHTQCITEAEKYGPK 60
           MVWFQCEDCGENLKKPKLPNHFRICSA+KLSCIDCGE FGQ SVQGHTQCITEAEKYGPK
Sbjct: 1   MVWFQCEDCGENLKKPKLPNHFRICSANKLSCIDCGETFGQQSVQGHTQCITEAEKYGPK 60

Query: 61  GQGKAPNGATPKTNKNAKQQPDVDINVGLSERPPWFCSLCNTKATSKQTLLLHADG 116
           GQGKA NG   K   ++KQ+P+VDI VGLSERPPWFCSLCNTKATSKQ LLLHADG
Sbjct: 61  GQGKALNGTPAKGKSDSKQRPEVDITVGLSERPPWFCSLCNTKATSKQALLLHADG 116


>GSVIVT01008148001 assembled CDS
          Length = 318

 Score = 60.1 bits (144), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 32/67 (47%), Positives = 39/67 (58%)

Query: 48  TQCITEAEKYGPKGQGKAPNGATPKTNKNAKQQPDVDINVGLSERPPWFCSLCNTKATSK 107
           T C+ +A           PNG + K   ++KQ+ + DI VGLS  PPW CSLCNTKATSK
Sbjct: 195 THCLFQAHHIRHSPCIGTPNGTSEKVKSDSKQRLENDITVGLSGHPPWSCSLCNTKATSK 254

Query: 108 QTLLLHA 114
              L HA
Sbjct: 255 LAQLQHA 261