Jatropha Genome Database

JcCB0111071.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0111071.10 + phase: 0 /partial
         (306 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01029079001 assembled CDS                                       527   e-150
GSVIVT01000729001 assembled CDS                                       277   4e-75
GSVIVT01031225001 assembled CDS                                       115   2e-26
GSVIVT01035022001 assembled CDS                                       108   2e-24
GSVIVT01031217001 assembled CDS                                        60   1e-09
GSVIVT01019412001 assembled CDS                                        54   1e-07
GSVIVT01033815001 assembled CDS                                        52   3e-07
GSVIVT01017638001 assembled CDS                                        52   5e-07

>GSVIVT01029079001 assembled CDS
          Length = 496

 Score =  527 bits (1357), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 250/292 (85%), Positives = 273/292 (93%)

Query: 15  DARNFGWEINENVNFNWKKLLHKKTDEIMRLNGIYKRLLSNAGVKLFEGGGKVVGPNEVE 74
           DA+N+GWE+N+ V+FNWKKLLHKKT+EI+RLNGIYKRLL+NAGVKL+EG GK+VGPNEVE
Sbjct: 93  DAKNYGWELNDKVDFNWKKLLHKKTEEIVRLNGIYKRLLTNAGVKLYEGEGKIVGPNEVE 152

Query: 75  VTQLDGTKLSYSAKHILIATGSRAQRPNIPGQELAITSDEALSLEEMPKRAVVLGGGYIA 134
           VTQLDGTKL YSAKHILIATGSRAQRP IPGQEL+ITSDEALSL+E+PKRAV+LGGGYIA
Sbjct: 153 VTQLDGTKLCYSAKHILIATGSRAQRPTIPGQELSITSDEALSLDELPKRAVILGGGYIA 212

Query: 135 VEFASIWRGMGATVDLVFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTLTQLTKTEN 194
           VEFASIW GMG  VDL FRKELPLRGFDDEMRAVVARNLE RGINLHPRTTL++L KTE+
Sbjct: 213 VEFASIWNGMGVAVDLFFRKELPLRGFDDEMRAVVARNLEARGINLHPRTTLSELVKTED 272

Query: 195 GIIALTDHGEELLADVVLFATGRAPNSKRLNLEAVGVELDSAGAIKVDEYSCTNVPSIYA 254
           GI  +TDHGEEL ADVVLFATGRAPN+KRLNLE VGVELD  GA+KVDEYS TN+PSI+A
Sbjct: 273 GIKVITDHGEELTADVVLFATGRAPNTKRLNLEVVGVELDKMGAVKVDEYSRTNIPSIWA 332

Query: 255 IGDVTNRMNLTPVALMEGTCFAKTVFGGQPSKPDYKDIPCAVFSIPPLSVVG 306
           IGDVTNRMNLTPVALMEGT FAKTVFGGQPSKPDYKDIPCAVF +PPLSVVG
Sbjct: 333 IGDVTNRMNLTPVALMEGTYFAKTVFGGQPSKPDYKDIPCAVFCLPPLSVVG 384


>GSVIVT01000729001 assembled CDS
          Length = 559

 Score =  277 bits (709), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 145/289 (50%), Positives = 193/289 (66%), Gaps = 6/289 (2%)

Query: 19  FGWEINENVNFNWKKLLHKKTDEIMRLNGIYKRLLSNAGVKLFEGGGKVVGPNEVEVTQL 78
           FGW+       +W  L+  K  E+ RL GIYK +L NAGV L EG GK+V P+ V+V   
Sbjct: 155 FGWKFEAEPKHDWSTLMANKNAELQRLTGIYKNILKNAGVTLIEGRGKIVDPHTVDV--- 211

Query: 79  DGTKLSYSAKHILIATGSRAQRPNIPGQELAITSDEALSLEEMPKRAVVLGGGYIAVEFA 138
           DG KL Y+A+HILIA G R   P IPG E AI SD AL L   PK+  ++GGGYIA+EFA
Sbjct: 212 DG-KL-YTARHILIAVGGRPFIPEIPGSEHAIDSDVALDLPSKPKKIGIVGGGYIALEFA 269

Query: 139 SIWRGMGATVDLVFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTLTQLTKTENGIIA 198
            I+ G+   V +  R++  LRGFD+++R  VA  +  RGI  H   +   + K+ +G ++
Sbjct: 270 GIFNGLNTDVHVFIRQKKVLRGFDEDVRDFVAEQMSLRGIEFHTEESPQAILKSADGSLS 329

Query: 199 L-TDHGEELLADVVLFATGRAPNSKRLNLEAVGVELDSAGAIKVDEYSCTNVPSIYAIGD 257
           L T+ G       ++FATGR PN+K L LE VGV++   GAI+VDE+S T+VPSI+A+GD
Sbjct: 330 LKTNKGTVEGFSHIMFATGRRPNTKNLGLETVGVKMTKTGAIEVDEFSRTSVPSIWAVGD 389

Query: 258 VTNRMNLTPVALMEGTCFAKTVFGGQPSKPDYKDIPCAVFSIPPLSVVG 306
           VT+R+NLTPVALMEG   AKT+FG +P+KPDY+ +P AVFS PP+  VG
Sbjct: 390 VTDRINLTPVALMEGGALAKTLFGNEPTKPDYRAVPSAVFSQPPIGQVG 438


>GSVIVT01031225001 assembled CDS
          Length = 588

 Score =  115 bits (289), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 88/272 (32%), Positives = 141/272 (51%), Gaps = 21/272 (7%)

Query: 53  LSNAGVKLFEGGGKVVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRPN---IPGQELA 109
           L   GV + EG G ++GP +V+  ++  +    +AK I+IATGS +  P    + G+ + 
Sbjct: 179 LKGLGVDILEGVGTILGPQKVKYGKVGSSGNVITAKDIIIATGSVSFVPKGVEVDGKTV- 237

Query: 110 ITSDEALSLEEMPKRAVVLGGGYIAVEFASIWRGMGATVDLVFRKELPLRGFDDEMRAVV 169
           ITSD+AL LE +P    ++G GYI +EF+ ++  +G+ V  V   +  + GFD E+  + 
Sbjct: 238 ITSDQALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFVEALDQLMPGFDPEIGKLA 297

Query: 170 ARNL-EGRGINLHPRTTLTQLTKTENG---IIALTDH-----GEELLADVVLFATGRAPN 220
            R L   R I+ +     +++T  ++G   +I L D       + L  D  L ATGRAP 
Sbjct: 298 RRVLINPRKIDYYTGVFASKITPAKDGKPVMIDLIDAKTKEPKDTLEVDAALIATGRAPF 357

Query: 221 SKRLNLEAVGVELDSAGAIKVDEY------SCTNVPSIYAIGDVTNRMNLTPVALMEGTC 274
           +K L LE + VE    G + VDE+          VP +Y IGD   +M L   A  +G  
Sbjct: 358 TKGLGLENIRVE-TQCGFVPVDEHMQVIDADGKLVPHLYCIGDANGKMMLAHAASAQGIS 416

Query: 275 FAKTVFGGQPSKPDYKDIPCAVFSIPPLSVVG 306
             + +  G+ +  ++  IP A F+ P +S+VG
Sbjct: 417 VVEQI-SGKDNVLNHLSIPAACFTHPEISMVG 447


>GSVIVT01035022001 assembled CDS
          Length = 571

 Score =  108 bits (271), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 86/268 (32%), Positives = 136/268 (50%), Gaps = 21/268 (7%)

Query: 57  GVKLFEGGGKVVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRPN---IPGQELAITSD 113
           GV +  G G ++GP +V+  ++  ++   +AK+I+IATGS    P    + G+ + ITSD
Sbjct: 189 GVDILTGVGTILGPQKVKYGKVGFSENVITAKNIIIATGSVPFVPKGIEVDGKTV-ITSD 247

Query: 114 EALSLEEMPKRAVVLGGGYIAVEFASIWRGMGATVDLVFRKELPLRGFDDEMRAVVARNL 173
            AL LE +P    ++G GYI +EF+ ++  +G+ V  +   +  + GFD E+  +  R L
Sbjct: 248 HALKLESVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRVL 307

Query: 174 -EGRGINLHPRTTLTQLTKTENG-------IIALTDHGEELL-ADVVLFATGRAPNSKRL 224
              R I+ H     +++T  ++G       I A T   ++ L  D  L ATGRAP +  L
Sbjct: 308 INPRKIDYHTGVFASKITPAKDGKPVRIELIDAKTKEPKDALEVDAALIATGRAPFTNGL 367

Query: 225 NLEAVGVELDSAGAIKVDE------YSCTNVPSIYAIGDVTNRMNLTPVALMEGTCFAKT 278
            LE + V +   G I VDE           VP +Y IGD   +M L   A  +G    + 
Sbjct: 368 GLENISV-VTQRGFIPVDERMRVIDADGNLVPHLYCIGDANGKMMLAHAASAQGISVVEQ 426

Query: 279 VFGGQPSKPDYKDIPCAVFSIPPLSVVG 306
           V  G+    ++  IP A F+ P +S+VG
Sbjct: 427 VT-GKDHVLNHLSIPAACFTHPEISMVG 453


>GSVIVT01031217001 assembled CDS
          Length = 187

 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 37/99 (37%), Positives = 59/99 (59%), Gaps = 8/99 (8%)

Query: 53  LSNAGVKLFEGGGKVVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRPNIP-GQEL--- 108
           L   GV + EG G ++GP +V+  ++  +    +AK I+IATGS    P +P G E+   
Sbjct: 46  LKGLGVVILEGVGTILGPQKVKYGKVGSSGNVITAKDIIIATGSV---PFVPKGVEVDGK 102

Query: 109 -AITSDEALSLEEMPKRAVVLGGGYIAVEFASIWRGMGA 146
             ITSD+AL LE +P    ++G GYI +EF+ ++  +G+
Sbjct: 103 TVITSDQALKLEFIPDWIAIVGSGYIGLEFSDVYMALGS 141


>GSVIVT01019412001 assembled CDS
          Length = 490

 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 51/191 (26%), Positives = 85/191 (44%), Gaps = 17/191 (8%)

Query: 80  GTKLSYSAKHILIATGSRAQR------PNIPGQEL---AITSDEALSLEEMPKRAVVLGG 130
           G  L Y +  ++IATG  A R       N+PG         +D  +S  E  ++ V++GG
Sbjct: 160 GKLLKYGS--LIIATGCTASRLPDKIGGNLPGVHYIRDVADADSLISSLEKARKVVIVGG 217

Query: 131 GYIAVEFASIWRGMGATVDLVFRKE-LPLRGFDDEMRAVVARNLEGRGINLHPRTTLTQL 189
           GYI +E A+   G      ++F ++ L  R F   +        +  G+      ++  +
Sbjct: 218 GYIGMEVAAAAAGWKLDTTIIFPEDHLLQRLFTPTLARRYEEFYQENGVKFVKGASIKNI 277

Query: 190 TKTENGIIALT--DHGEELLADVVLFATGRAPNSKRLNLEAVGVELDSAGAIKVDEYSCT 247
               +G +     ++G  + AD ++   G  P       E VG+   + G I+VD    T
Sbjct: 278 EAGSDGHVTAVKLENGSTIEADTIIIGIGAKPAVS--PFERVGIN-TTVGGIQVDGQFRT 334

Query: 248 NVPSIYAIGDV 258
           +VP I+AIGDV
Sbjct: 335 SVPGIFAIGDV 345


>GSVIVT01033815001 assembled CDS
          Length = 434

 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/141 (29%), Positives = 66/141 (46%), Gaps = 9/141 (6%)

Query: 124 RAVVLGGGYIAVEFASIWRGMGATVDLVFRKELPL-RGFDDEMRAVVARNLEGRGINLHP 182
           +AV++GGGYI +E +++ +     V +V+ +   + R F   + A        +GI +  
Sbjct: 165 KAVIVGGGYIGLELSAVMKINNLDVCMVYPEPWCMPRLFTAGIAAFYEGYYANKGIKIIK 224

Query: 183 RTTLTQLTKTENGIIA---LTDHGEELLADVVLFATGRAPNSKRLNLEAVGVELDSAGAI 239
            T     T   NG +    L D G  L AD+V+   G  P +        G   +  G I
Sbjct: 225 GTVAVGFTSDANGEVKEVKLKD-GRVLEADIVVVGVGGRPLTTLFK----GQVEEEKGGI 279

Query: 240 KVDEYSCTNVPSIYAIGDVTN 260
           K DE+  T+VP +YA+GDV  
Sbjct: 280 KTDEFFKTSVPDVYAVGDVAT 300


>GSVIVT01017638001 assembled CDS
          Length = 310

 Score = 51.6 bits (122), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 55/109 (50%), Gaps = 2/109 (1%)

Query: 78  LDGTKLSYSAKHILIATGSRAQRPNIPGQELAITSDEALSLEEMPKRAVVLGGGYIAVEF 137
           L  + + + AKH   + G    + N    +  ++S  AL+L E+PK+ VV+G GYI +E 
Sbjct: 89  LHSSHMYHEAKHSFASHG--LFKKNKVNYKRIVSSTGALALSEIPKKLVVVGAGYIGLEM 146

Query: 138 ASIWRGMGATVDLVFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTL 186
            S+W  +G+ V +V      +   D E+R    R LE + +    +T +
Sbjct: 147 GSVWARLGSEVTVVEFAPDIVPTMDGEIRKQFQRALEKQKMKFMVKTKV 195