Jatropha Genome Database
- JcCB0110871.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0110871.10 + phase: 0 /partial
(315 letters)
Database: grape_pep_20100319
26,346 sequences; 9,959,944 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
GSVIVT01019677001 assembled CDS 395 e-110
GSVIVT01001899001 assembled CDS 239 1e-63
GSVIVT01037531001 assembled CDS 187 5e-48
GSVIVT01022582001 assembled CDS 164 7e-41
GSVIVT01012836001 assembled CDS 65 4e-11
GSVIVT01001912001 assembled CDS 59 3e-09
GSVIVT01035988001 assembled CDS 59 4e-09
GSVIVT01014079001 assembled CDS 54 9e-08
GSVIVT01038082001 assembled CDS 51 8e-07
GSVIVT01009158001 assembled CDS 50 1e-06
GSVIVT01004859001 assembled CDS 50 2e-06
GSVIVT01034269001 assembled CDS 49 3e-06
>GSVIVT01019677001 assembled CDS
Length = 944
Score = 395 bits (1014), Expect = e-110, Method: Compositional matrix adjust.
Identities = 190/273 (69%), Positives = 229/273 (83%), Gaps = 1/273 (0%)
Query: 1 RKMISQGAFTKKQFNVEVFPLSLKVIDSRDDCEFTIRLSKKASLHELYERVCTLRGIERD 60
RKMISQG T K+F VE++ L LK+ DSRD+ + IRLSKKAS+HELYERVCTL+ +E++
Sbjct: 146 RKMISQG-ITHKKFMVEIYRLCLKLTDSRDNSQSVIRLSKKASVHELYERVCTLKVVEQE 204
Query: 61 KTIIWDYFNKHKNSRLVDSNRTLEESNLQMDQEILLELQVGVPYPSQSGKDSTGNELALV 120
K IWDYFNK K + LV SN+TLEESNLQMDQ+ILLE+Q+ +PS G DSTGNELALV
Sbjct: 205 KARIWDYFNKRKQAILVASNQTLEESNLQMDQDILLEVQLDGYWPSGFGMDSTGNELALV 264
Query: 121 TMEPSRTSLSIAGGPSLSNGHSSTYSLNLRPGSALNAGFTDIDLGFGAQTAVRRGERGGL 180
MEP R+S+SIAGGP+LSNG+S ++ NL GS L + FTD++ G+ +V +G+RGGL
Sbjct: 265 PMEPPRSSVSIAGGPTLSNGYSKVHTSNLYQGSPLGSTFTDMEDGYDVLRSVAKGDRGGL 324
Query: 181 AGLQNMGNTCFMNSALQCLVHTPPLAEYFLQDYSEEINTENPLGMHGELALAFGDLLRKL 240
AGLQN+GNTCFMNSA+QCLVHTPP+ EYFLQDY+EEIN +NPLGM+GELA AFG+LLRKL
Sbjct: 325 AGLQNLGNTCFMNSAIQCLVHTPPIFEYFLQDYTEEINKQNPLGMNGELAFAFGELLRKL 384
Query: 241 WSSGRSTIAPRAFKGKLALFAPQFSGYNQHDSQ 273
WSSGR+ +APRAFKGKLA FAPQFSGYNQHDSQ
Sbjct: 385 WSSGRTPVAPRAFKGKLARFAPQFSGYNQHDSQ 417
>GSVIVT01001899001 assembled CDS
Length = 955
Score = 239 bits (610), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 134/280 (47%), Positives = 181/280 (64%), Gaps = 8/280 (2%)
Query: 1 RKMISQGAFTKKQFNVEVFPLSLKVIDSRDDCEFTIRLSKKASLHELYERVCTLRGIERD 60
RK+I+ G ++ +VEV+PL L+++ TIR+SKK ++ EL+ R C + + +
Sbjct: 140 RKVINSG-LSQTGLSVEVYPLRLQLVVVPKGAHSTIRISKKETIGELHRRACEIFDLNME 198
Query: 61 KTIIWDYFNKHKNSRLVDSNRTLEESNLQMDQEILLELQ-------VGVPYPSQSGKDST 113
+ IWDY+ K++ + D ++TL+++N+Q DQ++L+E+ G S S
Sbjct: 199 QVCIWDYYGHRKHALMNDMDKTLDDANIQTDQDVLVEVHSNGSSSAFGGCMSSVQENGSA 258
Query: 114 GNELALVTMEPSRTSLSIAGGPSLSNGHSSTYSLNLRPGSALNAGFTDIDLGFGAQTAVR 173
E V +EPS++SLSIAGG S S G S + S L L + ++D +G
Sbjct: 259 DKETMSVLVEPSKSSLSIAGGLSASKGVSRSCSSELSQSQNLTSPVRELDSTYGVSGVST 318
Query: 174 RGERGGLAGLQNMGNTCFMNSALQCLVHTPPLAEYFLQDYSEEINTENPLGMHGELALAF 233
RG GGL GL N+GNTCFMNSA+QCLVHTP A YF +DY +EIN +NPLGM GELALAF
Sbjct: 319 RGATGGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFREDYHKEINWQNPLGMVGELALAF 378
Query: 234 GDLLRKLWSSGRSTIAPRAFKGKLALFAPQFSGYNQHDSQ 273
GDLLRKLW+ GR+ +APR FK KLA FAPQFSGYNQHDSQ
Sbjct: 379 GDLLRKLWAPGRTPVAPRPFKTKLARFAPQFSGYNQHDSQ 418
>GSVIVT01037531001 assembled CDS
Length = 921
Score = 187 bits (475), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 109/259 (42%), Positives = 142/259 (54%), Gaps = 42/259 (16%)
Query: 17 EVFPLSLKVIDSRDDCEFTIRLSKKASLHELYERVCTLRGIERDKTIIWDYFNKHKNSRL 76
+V+PL L++ R+ ++++KK + E + R C + +E + IWD+ + +
Sbjct: 134 DVYPLLLRLSILRETNSLGVKITKKDNAVEFFRRACKIFSVESELLHIWDFSGQTTLFFI 193
Query: 77 VDSNRTLEESNLQMDQEILLELQVGVPYPSQSGKDSTGNELALVTMEPSRTSLSIAGGPS 136
D N+ ++ Q DQEILLELQV S ++ +E+A S G S
Sbjct: 194 NDKNKLPKDCQRQSDQEILLELQVYGLSDSLRCREGKKDEMA--------AQHSNLAGSS 245
Query: 137 LSNGHSSTYSLNLRPGSALNAGFTDIDLGFGAQTAVRRGERG--GLAGLQNMGNTCFMNS 194
G S GE G GL GLQN+GNTCFMNS
Sbjct: 246 FFYGSS--------------------------------GEAGSLGLTGLQNLGNTCFMNS 273
Query: 195 ALQCLVHTPPLAEYFLQDYSEEINTENPLGMHGELALAFGDLLRKLWSSGRSTIAPRAFK 254
+LQCL HTP L +YFL DYS EIN EN LGM GE+ALAFGDL+RKLW+ G + +APR FK
Sbjct: 274 SLQCLAHTPKLVDYFLGDYSREINHENALGMDGEIALAFGDLIRKLWAPGATPVAPRMFK 333
Query: 255 GKLALFAPQFSGYNQHDSQ 273
KLA FAPQFSG+NQHDSQ
Sbjct: 334 SKLARFAPQFSGFNQHDSQ 352
>GSVIVT01022582001 assembled CDS
Length = 1092
Score = 164 bits (414), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 78/116 (67%), Positives = 89/116 (76%)
Query: 158 GFTDIDLGFGAQTAVRRGERGGLAGLQNMGNTCFMNSALQCLVHTPPLAEYFLQDYSEEI 217
G TD G G + + GL GL N+GNTCFMNSA+QCLVHTP L +YFL DY +EI
Sbjct: 83 GLTDSMKGRGGKKDDQMAGFLGLTGLHNIGNTCFMNSAIQCLVHTPKLVDYFLGDYRKEI 142
Query: 218 NTENPLGMHGELALAFGDLLRKLWSSGRSTIAPRAFKGKLALFAPQFSGYNQHDSQ 273
N ENPLGM+GELALAFGDLLRKLW+ G + +APR FK KL+ FAPQFSGYNQHDSQ
Sbjct: 143 NYENPLGMNGELALAFGDLLRKLWAPGATPVAPRMFKLKLSSFAPQFSGYNQHDSQ 198
>GSVIVT01012836001 assembled CDS
Length = 299
Score = 65.1 bits (157), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 54/121 (44%), Gaps = 11/121 (9%)
Query: 161 DIDLGFGAQTAVRRGERG--------GLAGLQNMGNTCFMNSALQCLVHTPPLAEYFLQD 212
D D RRG G GL GL N+GNTCFMNS LQ L+HTPPL YFL D
Sbjct: 145 DRDFDAANLRKRRRGADGANLSNLPWGLRGLNNLGNTCFMNSVLQALLHTPPLRNYFLSD 204
Query: 213 YSEEINTENPLGMHGELALAFGDLLRKLWSSGRSTIAPRAFKGKLALFAPQFSGYNQHDS 272
+ +N + LA + ++S R+ +P F A + Y Q D+
Sbjct: 205 RHNRNSNKN---LRLCLACDMDAMFSAVFSGDRTPYSPAKFLYSWWQHAANLASYEQQDA 261
Query: 273 Q 273
Sbjct: 262 H 262
>GSVIVT01001912001 assembled CDS
Length = 520
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 71/155 (45%), Gaps = 23/155 (14%)
Query: 121 TMEPSRTSLSIAGGPSLSNGHSSTYSLNLRPGSALNAGFTDIDLGFGAQTAVRRGERGGL 180
T +P R+ S GP+ S+G S ++ G D +L G T R G
Sbjct: 62 TTDPKRSGHST--GPAASSGKKQDGSDHVENG-------LDPELSIGI-TVRRIG----- 106
Query: 181 AGLQNMGNTCFMNSALQCLVHTPPLAEYFLQDYSEEINTENPLGMHGELALAF--GDLLR 238
AGL+N+GNTCF+NS LQCL +T PLA Y + +N + G AL + R
Sbjct: 107 AGLENLGNTCFLNSVLQCLTYTEPLAAYL-----QSGKHQNSCHIAGFCALCAIQKHVSR 161
Query: 239 KLWSSGRSTIAPRAFKGKLALFAPQFSGYNQHDSQ 273
L S+GR +AP+ L + F Q D+
Sbjct: 162 ALQSTGR-ILAPKDLVSNLRCISRNFRNARQEDAH 195
>GSVIVT01035988001 assembled CDS
Length = 529
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 42/95 (44%)
Query: 179 GLAGLQNMGNTCFMNSALQCLVHTPPLAEYFLQDYSEEINTENPLGMHGELALAFGDLLR 238
GL GL N+GNTCFMNS LQ L H PPL YFL D + L +
Sbjct: 177 GLRGLNNLGNTCFMNSVLQALFHAPPLRNYFLSDRHNRQSCRRRSSDRLCLPCDIDVIFS 236
Query: 239 KLWSSGRSTIAPRAFKGKLALFAPQFSGYNQHDSQ 273
++S R+ +P F + + Y Q D+
Sbjct: 237 AVFSGDRTPYSPARFLYSWWQHSENLASYEQQDAH 271
>GSVIVT01014079001 assembled CDS
Length = 915
Score = 53.9 bits (128), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 69/155 (44%), Gaps = 23/155 (14%)
Query: 121 TMEPSRTSLSIAGGPSLSNGHSSTYSLNLRPGSALNAGFTDIDLGFGAQTAVRRGERGGL 180
T +P R S GP+ S+G S ++ G D +L G T R G
Sbjct: 63 TTDPKRPGHST--GPAASSGKKQDGSDHVENG-------LDPELSIGI-TFRRIG----- 107
Query: 181 AGLQNMGNTCFMNSALQCLVHTPPLAEYFLQDYSEEINTENPLGMHGELALAF--GDLLR 238
AGL+N+GNTC++NS LQCL +T PLA Y + +N + G AL + R
Sbjct: 108 AGLENLGNTCYLNSVLQCLTYTEPLAAYL-----QSGKHQNSCRIAGFCALCAIQKHVSR 162
Query: 239 KLWSSGRSTIAPRAFKGKLALFAPQFSGYNQHDSQ 273
L S+GR + P+ L + F Q D+
Sbjct: 163 ALQSTGR-ILVPKDLVSNLRCISRNFRNARQEDAH 196
>GSVIVT01038082001 assembled CDS
Length = 635
Score = 50.8 bits (120), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 51/102 (50%), Gaps = 2/102 (1%)
Query: 173 RRGERGGLAGLQNMGNTCFMNSALQCLVHTPPLAEYFLQD-YSEEINTENPLGMHGELAL 231
++ + G GL+N+GN+C++NS LQCL +TPPLA + L +S ++ +
Sbjct: 14 QKRKNGPPLGLKNLGNSCYLNSVLQCLTYTPPLANFCLNHLHSSLCDSAVDRKRECPFCI 73
Query: 232 AFGDLLRKLWSSGRSTIAPRAFKGKLALFAPQFSGYNQHDSQ 273
++R L S + AP + L +FA F Q D+
Sbjct: 74 LEKRIVRSL-SMDLTQDAPSKIQSCLRIFAEHFRLGRQEDAH 114
>GSVIVT01009158001 assembled CDS
Length = 841
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 34/68 (50%), Gaps = 18/68 (26%)
Query: 162 IDLGFGAQTAVRRGERGGLA------------------GLQNMGNTCFMNSALQCLVHTP 203
+ LG G++ A R ++G + GL N GN+C+ N+ LQCL TP
Sbjct: 434 LPLGVGSEIAGRCSDKGLFSYEVFVKLYIWNKVELRPCGLMNCGNSCYANAVLQCLAFTP 493
Query: 204 PLAEYFLQ 211
PL YFLQ
Sbjct: 494 PLTSYFLQ 501
>GSVIVT01004859001 assembled CDS
Length = 331
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 49/116 (42%), Gaps = 8/116 (6%)
Query: 174 RGERGGLAGLQNMGNTCFMNSALQCLVHTPPLAEYFLQDYSEEINTENPLGMHGELALAF 233
GER GL+N GNTC+ NS LQ L P E L+ Y+ N +N L
Sbjct: 18 EGER--YFGLENFGNTCYCNSVLQALYFCVPFREQLLEYYT---NNKNLADAEENLLTCL 72
Query: 234 GDLLRKLWSSGRST--IAPRAFKGKLALFAPQFSGYNQHDSQVSTLGFPFNSFSAI 287
DL ++ S + T IAP+ F +L F Y D+ L F N I
Sbjct: 73 ADLFMQISSQKKKTGVIAPKRFVQRLKKQNELFRSYMHQDAH-EFLNFLLNELVDI 127
>GSVIVT01034269001 assembled CDS
Length = 369
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 46/102 (45%), Gaps = 7/102 (6%)
Query: 174 RGERGGLAGLQNMGNTCFMNSALQCLVHTPPLAEYFLQDYSEEINTENPLGMHGELALAF 233
GER GL+N GNTC+ NS LQ L P E L+ Y++ N +P L
Sbjct: 18 EGER--YFGLENFGNTCYCNSVLQALYFCVPFREQLLEYYAKNKNLGDP---EENLLTCL 72
Query: 234 GDLLRKLWSSGRST--IAPRAFKGKLALFAPQFSGYNQHDSQ 273
DL ++ S + T IAP+ F ++ F Y D+
Sbjct: 73 ADLFTQISSQKKKTGVIAPKRFVQRVRKQNELFRSYMHQDAH 114