Jatropha Genome Database

JcCB0110731.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0110731.10 + phase: 0 /partial
         (503 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01030280001 assembled CDS                                       674   0.0  

>GSVIVT01030280001 assembled CDS
          Length = 1134

 Score =  674 bits (1739), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 335/496 (67%), Positives = 391/496 (78%), Gaps = 6/496 (1%)

Query: 12  NNTISSIQKPLSNGSSGLDMLDDNSSAIGNGLRINTLARSSRGPLVDISNTLGTSCTNHR 71
           ++ I+  Q+PLSN       + DNS A GN      L RSS GPLVD+SN +GT  TN +
Sbjct: 365 DSKITCPQEPLSNRLCAPHTIIDNSVANGNCSINKPLGRSSGGPLVDVSNRIGTLLTNKK 424

Query: 72  RVNNEKRKLGRGTSISQFKRPRSSKFIIPLNKNVSYVLNGLSTSSSENSCCRRTVSTRYP 131
           +   EKR+LGR +SIS FKRPRSSKF  PLN NVS+V NGLST +SE++CCR+ VSTRYP
Sbjct: 425 QTITEKRRLGRRSSISPFKRPRSSKFCPPLNSNVSFVPNGLSTLASEDTCCRKRVSTRYP 484

Query: 132 FRTPRMYIKEYFEVPSSDKNMLEHFTDQVGWIKPEAAEKYKFCDESGVNCIGAEALYHML 191
           F  PRMYIKEYF V   +KN+LEH +D+V W+ P+ AEKY F DE G+  IG + LY  L
Sbjct: 485 FHAPRMYIKEYFGVLPFNKNVLEHLSDEVRWMNPDNAEKYMFPDEYGLGFIGVDDLYQRL 544

Query: 192 VQSGASIQCVSKEWTMNHYKWIIWKLACYERCYPWKSATRFLTVSNVHEELKYRYEREVN 251
            QSGAS+Q  SKEW  NHYKWIIWKLACYER YP K   RFLT+SNV EELKYRYEREVN
Sbjct: 545 AQSGASMQYASKEWIANHYKWIIWKLACYERFYPAKHMGRFLTMSNVLEELKYRYEREVN 604

Query: 252 HGHRSAIKRILEGDSPPSSMMVLCISAICISCKPKI--ENLALNGDECSNAARMELTDGW 309
           HGHRSAIKRILEGD+ PS+M+VLC+SAI  +C  KI   ++++NG E SNAA++ELTDGW
Sbjct: 605 HGHRSAIKRILEGDASPSTMVVLCVSAIHSTCDMKIGTHSVSINGSENSNAAKVELTDGW 664

Query: 310 YSIDALLDIPLSKQLSAGKLFVGQKIRIWGARLCGWAGPVSPLEILASRTVSLLLHINGT 369
           YSIDA LD  LSKQL AGKLF+GQK+RIWGA LCGW GPVSPLE   S+T  LL+HINGT
Sbjct: 665 YSIDAFLDALLSKQLFAGKLFIGQKLRIWGAGLCGWVGPVSPLE--TSKTAGLLVHINGT 722

Query: 370 YRAHWADRLGFCKGVGPPLAFRCIKNNGGPIPRTLVGVTRIYPILYKEKLRDGGSIVRSE 429
           YRAHWADRLGFCKGVGPPLAFRCIK+NGGP+P+TLV VTRIYPILYKE+L +GGSIVRS 
Sbjct: 723 YRAHWADRLGFCKGVGPPLAFRCIKSNGGPVPQTLVRVTRIYPILYKERLSNGGSIVRSV 782

Query: 430 RMEARTMQLYNQRHSAVVEGIVSEYQR--KGSHIYNDSDSEEGAKILKILETAADPEVIM 487
           RME + MQLYN R S VVEGI+SE+QR  + S I ND+DSEEGAKI +ILE+AA+PEV+M
Sbjct: 783 RMETKMMQLYNHRCSTVVEGIISEFQRGTRDSCINNDNDSEEGAKIFEILESAAEPEVLM 842

Query: 488 AEMSPEQLNSFASCQA 503
           AEM+ EQL SF S QA
Sbjct: 843 AEMTSEQLASFTSYQA 858