Jatropha Genome Database

JcCB0109661.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0109661.10 - phase: 0 
         (139 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01033518001 assembled CDS                                       106   4e-24

>GSVIVT01033518001 assembled CDS
          Length = 155

 Score =  106 bits (264), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 70/139 (50%), Positives = 82/139 (58%), Gaps = 38/139 (27%)

Query: 1   MGRGRGKGKKQTVIASHEDP-SIGEDDQVPAYKRRGRPTKPLXXXXXXXXXXXXXXXXXX 59
           MGRGRGKGKKQTVIA+ +DP S GE+++ P                              
Sbjct: 53  MGRGRGKGKKQTVIATRDDPGSDGENEKGP------------------------------ 82

Query: 60  XXVNDSISNKDAKSLAATENGQKRKRPGHTSENADSVKEENDVRTKLSTDNSAVSGRFQQ 119
                 I++KDAK+ A TENG+KRKR   T EN+DSVKEEN   TK S +N   S  F+Q
Sbjct: 83  ------ITSKDAKNQATTENGRKRKRSLQTKENSDSVKEENGTETK-SNNNDLKSVGFRQ 135

Query: 120 NGSRRKNKPRRAAEAVVEC 138
           NGSRRKNKPRRAAEA VEC
Sbjct: 136 NGSRRKNKPRRAAEAGVEC 154