Jatropha Genome Database

JcCB0109541.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0109541.20 + phase: 1 /pseudo/partial
         (79 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01003827001 assembled CDS                                        46   4e-06

>GSVIVT01003827001 assembled CDS
          Length = 196

 Score = 45.8 bits (107), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 21/44 (47%), Positives = 33/44 (75%), Gaps = 1/44 (2%)

Query: 1  AILIYQIDSFDPAFIPIHELTQPPNVLMQ-NSHVLERSELLDKG 43
          A+L+YQ+D +DPA +PIHE +Q P V+ + NS +L+ SE++  G
Sbjct: 33 AMLLYQLDPYDPAPVPIHEFSQQPMVVPKLNSRMLQGSEMIGVG 76