Jatropha Genome Database

JcCB0109541.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0109541.10 + phase: 1 /partial
         (146 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01003830001 assembled CDS                                       160   2e-40
GSVIVT01003826001 assembled CDS                                       157   2e-39
GSVIVT01003820001 assembled CDS                                       153   3e-38
GSVIVT01003825001 assembled CDS                                       150   3e-37
GSVIVT01003823001 assembled CDS                                       149   6e-37
GSVIVT01003828001 assembled CDS                                       143   3e-35
GSVIVT01015060001 assembled CDS                                        67   2e-12
GSVIVT01015058001 assembled CDS                                        67   2e-12
GSVIVT01015059001 assembled CDS                                        67   3e-12
GSVIVT01037538001 assembled CDS                                        50   3e-07
GSVIVT01033612001 assembled CDS                                        49   1e-06
GSVIVT01010807001 assembled CDS                                        46   7e-06

>GSVIVT01003830001 assembled CDS
          Length = 457

 Score =  160 bits (405), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 76/135 (56%), Positives = 98/135 (72%), Gaps = 2/135 (1%)

Query: 11  RRCRKYYIKGNKKGSLEKFTD-LPGMPDNIHYDGHGHFWIALPMEITTFWKAVFKYPFVR 69
           RRC KY+I+G +KGS++KF D LPG PDNI YDG GH+WIALPM  +  W    KYP++R
Sbjct: 322 RRCLKYHIQGERKGSVDKFIDNLPGPPDNILYDGEGHYWIALPMGNSLAWDLALKYPWIR 381

Query: 70  KLAGIVLKHKGNIGDTGKNGGVFVVDLEGKLISHYYDPELKLISSSVKIGNHLYCGSITY 129
           K+  I+ ++K       KNGGV  VDLEGK  ++YYDP L  ++S VKIGN+LYCGSIT 
Sbjct: 382 KVVAIMERYKVR-PHIEKNGGVLAVDLEGKPTAYYYDPSLSEVTSGVKIGNYLYCGSITK 440

Query: 130 PYIIRLNLAKYPALA 144
           PY+IRL+L ++ A A
Sbjct: 441 PYMIRLDLHQHAARA 455


>GSVIVT01003826001 assembled CDS
          Length = 539

 Score =  157 bits (396), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 75/135 (55%), Positives = 97/135 (71%), Gaps = 2/135 (1%)

Query: 11  RRCRKYYIKGNKKGSLEKFTD-LPGMPDNIHYDGHGHFWIALPMEITTFWKAVFKYPFVR 69
           RRC KY+I+G +KGS++KF D LPG PDNI YDG  H+WIALPM  +  W    KYP++R
Sbjct: 404 RRCLKYHIQGERKGSVDKFIDNLPGPPDNILYDGEEHYWIALPMGNSLAWDLALKYPWIR 463

Query: 70  KLAGIVLKHKGNIGDTGKNGGVFVVDLEGKLISHYYDPELKLISSSVKIGNHLYCGSITY 129
           K+  I+ ++K       KNGGV  VDLEGK  ++YYDP L  ++S VKIGN+LYCGSIT 
Sbjct: 464 KVVAIMERYKVR-PHIEKNGGVLAVDLEGKPTAYYYDPSLSEVTSGVKIGNYLYCGSITK 522

Query: 130 PYIIRLNLAKYPALA 144
           PY+IRL+L ++ A A
Sbjct: 523 PYMIRLDLHQHAARA 537


>GSVIVT01003820001 assembled CDS
          Length = 820

 Score =  153 bits (386), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 72/135 (53%), Positives = 95/135 (70%), Gaps = 2/135 (1%)

Query: 9   YRRRCRKYYIKGNKKGSLEKFTD-LPGMPDNIHYDGHGHFWIALPMEITTFWKAVFKYPF 67
           + +RC KYY++G +KGS++KF D LPGMPDNI YDG GH+WI L       W   FKYP 
Sbjct: 683 FMKRCSKYYLQGERKGSMDKFIDNLPGMPDNILYDGEGHYWIGLATGYNDLWDLAFKYPS 742

Query: 68  VRKLAGIVLKHKGNIGDTGKNGGVFVVDLEGKLISHYYDPELKLISSSVKIGNHLYCGSI 127
           +RK+  I+ K  G + +  KNGGV  +DLEGK I+HYYDP+L L+SS +KI  +LYCG I
Sbjct: 743 IRKVMAIMEKFIG-MPEIEKNGGVLAIDLEGKPIAHYYDPKLSLVSSGIKIDKYLYCGFI 801

Query: 128 TYPYIIRLNLAKYPA 142
             PY+IRL+L ++ A
Sbjct: 802 VKPYMIRLDLDQHAA 816



 Score =  153 bits (386), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 73/133 (54%), Positives = 93/133 (69%), Gaps = 2/133 (1%)

Query: 11  RRCRKYYIKGNKKGSLEKFTD-LPGMPDNIHYDGHGHFWIALPMEITTFWKAVFKYPFVR 69
           +RC KYYI+G +KGS+EKF D L GMPDNI YDG GH+WIAL       W    KYP +R
Sbjct: 248 KRCIKYYIQGERKGSMEKFIDNLSGMPDNILYDGEGHYWIALATGTKGLWDLALKYPSIR 307

Query: 70  KLAGIVLKHKGNIGDTGKNGGVFVVDLEGKLISHYYDPELKLISSSVKIGNHLYCGSITY 129
           K+  I+ ++ G      KNGG+  VDLEGK I+HYYDPEL ++SS +K+G +LYCGS   
Sbjct: 308 KVMAILERYIGR-PHIEKNGGILAVDLEGKPIAHYYDPELSMVSSGIKVGKYLYCGSFVK 366

Query: 130 PYIIRLNLAKYPA 142
           PYIIRL+L ++ A
Sbjct: 367 PYIIRLDLDQHAA 379


>GSVIVT01003825001 assembled CDS
          Length = 269

 Score =  150 bits (378), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 74/136 (54%), Positives = 97/136 (71%), Gaps = 2/136 (1%)

Query: 11  RRCRKYYIKGNKKGSLEKFTD-LPGMPDNIHYDGHGHFWIALPMEITTFWKAVFKYPFVR 69
           RRC KY+I+G +KGS++KF D LPG PDNI YDG GH+WIALPM  +  W    KYP++R
Sbjct: 134 RRCLKYHIQGERKGSMDKFIDNLPGPPDNILYDGEGHYWIALPMGNSLAWDLALKYPWIR 193

Query: 70  KLAGIVLKHKGNIGDTGKNGGVFVVDLEGKLISHYYDPELKLISSSVKIGNHLYCGSITY 129
           K+  I+ ++K       KNGGV  VDLEGK  ++Y+DP L  +SS VKIGN+LYCGS+  
Sbjct: 194 KVVAIMERYKVR-PHIEKNGGVLAVDLEGKPTAYYHDPGLSEVSSGVKIGNYLYCGSVAK 252

Query: 130 PYIIRLNLAKYPALAN 145
           PY+IRL+L ++ A A 
Sbjct: 253 PYMIRLDLHQHVARAT 268


>GSVIVT01003823001 assembled CDS
          Length = 417

 Score =  149 bits (375), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 70/135 (51%), Positives = 93/135 (68%), Gaps = 2/135 (1%)

Query: 9   YRRRCRKYYIKGNKKGSLEKFTD-LPGMPDNIHYDGHGHFWIALPMEITTFWKAVFKYPF 67
           + +RC KYYI+G +KGS++KF D LPGMPDNI YDG GH+WI L       W    KYP 
Sbjct: 280 FMKRCSKYYIQGERKGSVDKFIDNLPGMPDNILYDGEGHYWIGLATGYNDLWDLALKYPS 339

Query: 68  VRKLAGIVLKHKGNIGDTGKNGGVFVVDLEGKLISHYYDPELKLISSSVKIGNHLYCGSI 127
           +RK+  I+ +  G   +  KNGGV  +DLEGK I+HYYDP+L L+SS +KI  +LYCG +
Sbjct: 340 IRKIMAIMERFIGR-PEFEKNGGVLAIDLEGKPIAHYYDPKLSLMSSGIKIDKYLYCGFV 398

Query: 128 TYPYIIRLNLAKYPA 142
             PY+IRL+L ++ A
Sbjct: 399 VKPYMIRLDLDQHAA 413


>GSVIVT01003828001 assembled CDS
          Length = 175

 Score =  143 bits (360), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 72/136 (52%), Positives = 94/136 (69%), Gaps = 2/136 (1%)

Query: 11  RRCRKYYIKGNKKGSLEKFTD-LPGMPDNIHYDGHGHFWIALPMEITTFWKAVFKYPFVR 69
           + C KYYI+G +KGS++KF D L G PDNI YDG GH+WIALPM  +  W    KYP++R
Sbjct: 40  KMCLKYYIQGERKGSMDKFIDNLSGTPDNILYDGEGHYWIALPMGNSLAWDLALKYPWIR 99

Query: 70  KLAGIVLKHKGNIGDTGKNGGVFVVDLEGKLISHYYDPELKLISSSVKIGNHLYCGSITY 129
           K+  I+ ++K       KNGGV VVDLEG   ++YYD  L  ++S VKIGNHLYCGSIT 
Sbjct: 100 KVVAIMERYKVR-PHMEKNGGVLVVDLEGNPTAYYYDLGLSEVTSGVKIGNHLYCGSITT 158

Query: 130 PYIIRLNLAKYPALAN 145
            Y+IRL++ ++ A A 
Sbjct: 159 RYMIRLDIHQHAARAT 174


>GSVIVT01015060001 assembled CDS
          Length = 368

 Score = 67.4 bits (163), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 42/133 (31%), Positives = 69/133 (51%), Gaps = 4/133 (3%)

Query: 9   YRRRCRKYYIKGNKKGSLEKFTD-LPGMPDNIHYDGHGHFWIALPMEITTFWKAVFKYPF 67
           ++ RC KY++KG +KG  E F D LP  PDNI+    G FWIAL    +  ++ V     
Sbjct: 233 WKFRCLKYWLKGERKGRTETFIDNLPNGPDNINLAPDGSFWIALIKLASDGFEFVHASKA 292

Query: 68  VRKLAGIVLKHKGNIGDTGKNGGVFVVDLEGKLISHYYDPELKLIS---SSVKIGNHLYC 124
           ++       K    +  + +   V  V  +GK++  + DP  K++S   S+++  +HLY 
Sbjct: 293 LKHFLATFPKLFQLVNGSNEKATVVKVAADGKIVDKFDDPNGKVMSFVTSALEFEDHLYL 352

Query: 125 GSITYPYIIRLNL 137
           GS+   +I +L L
Sbjct: 353 GSLNTNFIGKLPL 365


>GSVIVT01015058001 assembled CDS
          Length = 382

 Score = 67.4 bits (163), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 42/128 (32%), Positives = 68/128 (53%), Gaps = 4/128 (3%)

Query: 9   YRRRCRKYYIKGNKKGSLEKFTD-LPGMPDNIHYDGHGHFWIALPMEITTFWKAVFKYPF 67
           ++ RC KY+++G +KG  E F D LPG PDN++    G FWIAL    +  ++ V     
Sbjct: 247 WKFRCLKYWLEGERKGRTETFIDNLPGGPDNVNLAPDGSFWIALIKVTSDGFEFVHTSKA 306

Query: 68  VRKLAGIVLKHKGNIGDTGKNGGVFVVDLEGKLISHYYDPELKLIS---SSVKIGNHLYC 124
           ++ L     K    +  + K   V  V  +GK+I  + DP  K+IS   S+++  ++LY 
Sbjct: 307 LKHLLATFPKLFQLVKGSHKKASVVKVAADGKIIDKFDDPNGKVISFVTSALEFEDYLYL 366

Query: 125 GSITYPYI 132
           GS+   +I
Sbjct: 367 GSLNTNFI 374


>GSVIVT01015059001 assembled CDS
          Length = 461

 Score = 66.6 bits (161), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 43/133 (32%), Positives = 65/133 (48%), Gaps = 4/133 (3%)

Query: 9   YRRRCRKYYIKGNKKGSLEKFTD-LPGMPDNIHYDGHGHFWIALPMEITTFWKAVFKYPF 67
           ++ RC KY++KG +KG  E F D LPG PDNI+    G FWIAL          V     
Sbjct: 326 WKFRCLKYWLKGERKGRTEVFVDNLPGGPDNINLAPDGSFWIALLELSREGMGFVHTSKA 385

Query: 68  VRKLAGIVLKHKGNIGDTGKNGGVFVVDLEGKLISHYYDPE---LKLISSSVKIGNHLYC 124
            + L     K  G +    K   V  V  +GK++  + DP    +  ++++++   HLY 
Sbjct: 386 SKHLVATFPKLLGLVQGMQKKAMVVKVGADGKMMKRFNDPNGSVMSFVTNALEFEEHLYL 445

Query: 125 GSITYPYIIRLNL 137
           GS+   +I +L L
Sbjct: 446 GSLNTNFIGKLPL 458


>GSVIVT01037538001 assembled CDS
          Length = 328

 Score = 50.4 bits (119), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 34/124 (27%), Positives = 58/124 (46%), Gaps = 22/124 (17%)

Query: 12  RCRKYYIKGNKKGSLEKFTDLPGMPDNIHYDGHGHFWIALPMEITTFWKAVFKYPFVRKL 71
           R  KY++KG+K G+ E F  LPG PDN+  +  G FW+A+    T +    +      +L
Sbjct: 218 RLVKYWLKGDKAGTSEVFAILPGYPDNVRTNEKGEFWVAIHCRRTMYQ---YLLHIGGRL 274

Query: 72  AGIVLKHKGNIGDTGKNGGVFVVDLEGKLISHYYDPELKLISSSVKIGNH---LYCGSIT 128
             +V+K+                  EGKL+    D E K++ +  ++      L+ GS+ 
Sbjct: 275 HAVVVKYSP----------------EGKLVKILEDSEGKVVRAVSEVEEREGKLWMGSVL 318

Query: 129 YPYI 132
            P++
Sbjct: 319 MPFV 322


>GSVIVT01033612001 assembled CDS
          Length = 365

 Score = 48.5 bits (114), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 3/78 (3%)

Query: 4   FGLVHYRRRCR--KYYIKGNKKGSLEKFTDLPGMPDNIHYDGHGHFWIALPMEITTFWKA 61
           F L+    RCR  +++++ +K G++E FT LPG PDNI  +  G FW+ +        + 
Sbjct: 234 FILLSETSRCRILRFWLQTSKAGTVEVFTLLPGFPDNIKRNSKGEFWVGMHSRKGKLVEW 293

Query: 62  VFKYPFV-RKLAGIVLKH 78
              YP++ R L  +   H
Sbjct: 294 FLSYPWIGRTLLKLPFPH 311


>GSVIVT01010807001 assembled CDS
          Length = 365

 Score = 45.8 bits (107), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 34/60 (56%)

Query: 12  RCRKYYIKGNKKGSLEKFTDLPGMPDNIHYDGHGHFWIALPMEITTFWKAVFKYPFVRKL 71
           R  KY+++G K G +E   +LPG PDN+  +  G FW+A+    T   + +   P+++ +
Sbjct: 218 RLMKYWLEGPKSGIVELVANLPGFPDNVRLNERGQFWVAIDCCRTPAQEVLTHNPWLKNI 277