Jatropha Genome Database

JcCB0109281.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0109281.10 - phase: 0 
         (237 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01016718001 assembled CDS                                       303   4e-83

>GSVIVT01016718001 assembled CDS
          Length = 222

 Score =  303 bits (776), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 155/219 (70%), Positives = 176/219 (80%), Gaps = 1/219 (0%)

Query: 1   METSPSYFDPEDLTSREQFRRYGKRHSTSSVSPHKDISVSKFKESRLLYEGQSIHSPTNA 60
           METSPSYFDPEDL+ RE++RRYGKR S SS+SP+++ SVSK+  +RLL++GQSI    NA
Sbjct: 5   METSPSYFDPEDLSIREKYRRYGKRQSGSSISPYQENSVSKYSGTRLLFDGQSIQRQPNA 64

Query: 61  ALLLENIKQETDSIGYTDHFGGTPARTHSTFKRRSSIDSYGISEVDLGADSVRRHGSESL 120
           AL LE+IK E +S    DH  GTPAR  S  KRR SIDS+GISEVD G DSVRR GS SL
Sbjct: 65  ALFLEDIKLEVESF-EADHSEGTPARAQSASKRRLSIDSHGISEVDAGIDSVRRVGSHSL 123

Query: 121 KACKIEDDSLTDIGETIFGLFASLLDSAIQGLMPIPDLILRFEKSCRDVSESIRYGPKIR 180
           K+CK EDD L D GET F LFASLLDSA+QGL+ IPDLIL+FE S R+VSESIRYG    
Sbjct: 124 KSCKHEDDLLADAGETTFALFASLLDSALQGLLSIPDLILQFETSSRNVSESIRYGSTTW 183

Query: 181 HRVVEDKLMRQKAQLLLDEAASWSLLWYLYGKGNQSLSS 219
           HRVVEDKLMRQKA LLLDEAASWSLLW+LYGKGN SL+S
Sbjct: 184 HRVVEDKLMRQKALLLLDEAASWSLLWHLYGKGNNSLTS 222