Jatropha Genome Database

JcCB0108421.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0108421.10 - phase: 0 /partial
         (425 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01032672001 assembled CDS                                       309   1e-84
GSVIVT01010189001 assembled CDS                                       136   2e-32

>GSVIVT01032672001 assembled CDS
          Length = 384

 Score =  309 bits (792), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 163/250 (65%), Positives = 182/250 (72%), Gaps = 22/250 (8%)

Query: 182 GIGKPKNLSSFVGTSGEVIAVKDGG------------------GHIGQTGTNAVTIAEPD 223
           G GK K+ SSF G++ +V+ +KDG                   G I     NAVTIAEPD
Sbjct: 101 GNGKAKDHSSF-GSNRDVL-MKDGAIVLSTNSARASPSENHRQGRISHY-QNAVTIAEPD 157

Query: 224 GEMYYSQYLQATEGAGSGGKDVGVENGCXXXXXXXXXXXXXXXXXXLRAILSDAVTGALM 283
           G+MYYSQ+LQ  EG+  G K++ VENGC                  L+AILSD +TGALM
Sbjct: 158 GDMYYSQFLQGPEGSAPGQKELAVENGCGFSGRKDVSLSTESGES-LKAILSDPLTGALM 216

Query: 284 DDAMILPCGHSFGAGGIQHVIRTKACYTCSQSISEDAIAPNLSLRAAVQAFRREEELQFY 343
           DDAMILPCGHSFG GG+QHVI+ KAC TCSQ  SED++ PNLSLRAAVQAFRREEELQ Y
Sbjct: 217 DDAMILPCGHSFGGGGMQHVIKMKACSTCSQPFSEDSVQPNLSLRAAVQAFRREEELQVY 276

Query: 344 RSSKRRRERFDQDKGVYGDSTATDTPRGRGVQFPFAVTDRVIIKGNKRTPQRFVGREAVV 403
           R+SKRRRER DQDK  YGDST  DTPRGRGVQFPFAVTDRVIIKGNKRTPQRFVGREAVV
Sbjct: 277 RTSKRRRERSDQDKCSYGDSTLMDTPRGRGVQFPFAVTDRVIIKGNKRTPQRFVGREAVV 336

Query: 404 TTQCLNGWFV 413
           TTQCLNGW+V
Sbjct: 337 TTQCLNGWYV 346


>GSVIVT01010189001 assembled CDS
          Length = 510

 Score =  136 bits (342), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 67/153 (43%), Positives = 103/153 (67%), Gaps = 10/153 (6%)

Query: 270 LRAILSDAVTGALMDDAMILPCGHSFGAGGIQHVIRTKACYTCSQSISEDAIAPNLSLRA 329
           LR++LSD ++GA ++DAM++ CGH+FG   ++ VI    C  C+  I   ++ PN +LRA
Sbjct: 320 LRSVLSDPLSGAFLEDAMVVSCGHTFGGLMLRKVIEMSRCTLCNAEIDTSSLIPNHALRA 379

Query: 330 AVQAFRREEELQFYRSS---KRRRERFDQDKGVY------GDSTATDTPRGRGVQFPFAV 380
           A  A + E++ + + ++   KRR+E  DQ   +       GD +A D    RGVQ+PF+V
Sbjct: 380 AAAAVKHEDDRRLFHNAALRKRRKEVGDQTDSIRRLNRENGDISADDGMH-RGVQYPFSV 438

Query: 381 TDRVIIKGNKRTPQRFVGREAVVTTQCLNGWFV 413
            ++VIIKGN+RTP +FVG+EAV+T+QCLNGW++
Sbjct: 439 NEKVIIKGNRRTPDKFVGKEAVITSQCLNGWYL 471