Jatropha Genome Database

JcCB0108291.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0108291.30 + phase: 0 
         (93 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01033776001 assembled CDS                                        77   1e-15

>GSVIVT01033776001 assembled CDS
          Length = 367

 Score = 77.4 bits (189), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 43/74 (58%), Positives = 49/74 (66%)

Query: 6  LLHALIPSWNSVVVLAXXXXYLAIAGSILPGKVVPGVTLQDGSRLYYRCNGXXXXXXXXX 65
          LL+AL PSW S  +L     YLAIAGSILPGKVVPGV L DG+RL+YRCNG         
Sbjct: 4  LLYALAPSWTSAAILLTFFVYLAIAGSILPGKVVPGVILSDGTRLHYRCNGLLSLLLLVG 63

Query: 66 XXGIGAKMDLVSPT 79
            G+G  M+ VSPT
Sbjct: 64 LLGVGVWMNYVSPT 77