Jatropha Genome Database

JcCB0108171.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0108171.10 - phase: 0 
         (596 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01010960001 assembled CDS                                       510   e-145
GSVIVT01017743001 assembled CDS                                       414   e-116
GSVIVT01031092001 assembled CDS                                       333   2e-91

>GSVIVT01010960001 assembled CDS
          Length = 841

 Score =  510 bits (1313), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 288/580 (49%), Positives = 355/580 (61%), Gaps = 7/580 (1%)

Query: 4   MLQVSRKFAEGKISFEEYVFTLKSAVGINMFIEAVGIGKGKHDLTGIAMEPTKPGHINSI 63
           +++VSR + EGK   EEYVF LK AVGI++ IEAVGIGKGK DLTGIAMEP K   + S+
Sbjct: 240 LVEVSRAYGEGKFLLEEYVFVLKDAVGIHLLIEAVGIGKGKQDLTGIAMEPIKTHRVFSL 299

Query: 64  RPEIPIGKACSSLTSSDIIKFLTGDFRLSKARSNHLFWEAVWPRLLARGWHSEQPKDNGS 123
           RPEIPIGKACS LTS +IIKFLTGDFRLSKARS+ LFWEAVWPRLLA+GWHSEQP D G+
Sbjct: 300 RPEIPIGKACSLLTSGEIIKFLTGDFRLSKARSSDLFWEAVWPRLLAKGWHSEQPNDQGT 359

Query: 124 SGSKHSLVFLIPGVKKFSRRRLVKSKHYFDSVSDVLNKVASDPGLLELEIEEVKGSKHKE 183
           SGSKH LVFLIPG+KKFSR++LVK  HYFDSVSD+L KV SDPGLLELEIE  KGS++KE
Sbjct: 360 SGSKHPLVFLIPGIKKFSRKKLVKGNHYFDSVSDILTKVVSDPGLLELEIEATKGSENKE 419

Query: 184 ECNWDPSLKLDQDGLINKQHQCYLQPHRSNYSQDVPKFTVVDTSLAHGAEQHKVRELRSL 243
           E  WD  ++ D D L N+Q  CYLQP  S   QD+ KFT+VDTS  HG EQ K+  L+SL
Sbjct: 420 EYRWDAQIEEDTDDLSNQQRHCYLQPRTSTSYQDLMKFTIVDTSSVHGEEQAKMIALKSL 479

Query: 244 PVXXXX-----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXYPAEDVTVSSSDCANNLPNI 298
           P+                                       P      +S +  +++ N 
Sbjct: 480 PIDTTDIFTHPTLFNETEQNTPEEYEDETEVTNASVSEKNLPDRGACANSPEHVSSILNS 539

Query: 299 DRHNYLCQTIAAEENNENKIRSVINAKEEKKTMKYQFGRKVKSSCSKYLVPITNQQSDIA 358
              N  C T  A  ++E +  SV N K+ +KT  Y+F +KVKS  S  L P+  +   I 
Sbjct: 540 GVPNEPCLTTVAVASHEGQKASVFNEKQLRKTTDYEFSQKVKSVHSNLLAPVPKRPRLIV 599

Query: 359 CDPKDSSCSNKNMSAERQLNEDESHCTAKSHDTCEHMVVQESPMQNSSPASSLAKDSPVE 418
           C   +SS   + + A+ +  E++S C +   D CE MVVQ    QN S ASS AK SP E
Sbjct: 600 CGNGESSRKIEKLPADSKAKEEKSCCRSNPPDACEKMVVQVVLTQNLSSASSSAKGSPDE 659

Query: 419 SNEGIVGENCLGREAYPENTQSPKLIDLNI-PHVSPDFPVTEPIMTDREQDDDNSCENKS 477
           SNEG  GE+C   +   E  +  +LIDLN+ P + P+  V E +      +  N   N+S
Sbjct: 660 SNEGTRGESCPRTQLSLEKPEPRQLIDLNVLPSIPPELAVYESLTMQTVANHGNLGANES 719

Query: 478 VFLSGTGQQPEPFKLPDAGPHLAQQPLANSRRQSTRNRPLTTKALEALELGFFSPKKKRK 537
             L  T QQPEP KL D      QQ + N RR STRNRPL+TKALEAL  GFF+  +KR+
Sbjct: 720 SVLPETSQQPEPPKLLDGKDSKEQQSMMNGRRHSTRNRPLSTKALEALASGFFNTTRKRR 779

Query: 538 GAD-ISESNSLSGSSRQVRKRIRVKATPKDVAANYIADSR 576
           GA+ + + NS   SSRQVR R     T  + A N  AD R
Sbjct: 780 GAEALQQKNSTPKSSRQVRGRTAASGTLNNDAGNNTADFR 819


>GSVIVT01017743001 assembled CDS
          Length = 847

 Score =  414 bits (1064), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 257/568 (45%), Positives = 336/568 (59%), Gaps = 55/568 (9%)

Query: 4   MLQVSRKFAEGKISFEEYVFTLKSAVGINMFIEAVGIGKGKHDLTGIAMEPTKPGHINSI 63
           +L+VS+ F EGKI  EEYV TLK+ VG+N+FIEAVGIGKG+ DLTGIA+EP K   +  +
Sbjct: 252 LLEVSKTFGEGKILLEEYVSTLKATVGMNIFIEAVGIGKGRQDLTGIALEPLKHNQVAPV 311

Query: 64  RPEIPIGKACSSLTSSDIIKFLTGDFRLSKARSNHLFWEAVWPRLLARGWHSEQPKD-NG 122
           RPE+PIGKACSSLT  +IIK LTGDFRLSKARS+ LFWEAVWPRLLARGWHSEQP+  N 
Sbjct: 312 RPEMPIGKACSSLTPQEIIKCLTGDFRLSKARSSDLFWEAVWPRLLARGWHSEQPRGHNY 371

Query: 123 SSGSKHSLVFLIPGVKKFSRRRLVKSKHYFDSVSDVLNKVASDPGLLELEIEEVKGSKHK 182
           ++GSK  LVFLIPGVKKFSRR+LVK  HYFDSVSDVL+KVASDPGLLE EIE  +G+K K
Sbjct: 372 AAGSKQPLVFLIPGVKKFSRRKLVKGSHYFDSVSDVLSKVASDPGLLEFEIEADEGNKSK 431

Query: 183 EECNWDPSLKLDQDGLINKQHQCYLQPHRSNYSQDVPKFTVVDTSLAHGAEQHKVRELRS 242
           EE       KLD+D L +++H CYLQP   N + D+ KFTVVDTSLA+GA ++K +E+RS
Sbjct: 432 EESGLTNETKLDKDDLSDQRHHCYLQPRTPNRNVDIVKFTVVDTSLANGA-KYKEKEVRS 490

Query: 243 LPVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYPAEDVTVSSSDCANNLPNIDRHN 302
           LP                                    +E++ V  S       N D  +
Sbjct: 491 LPFESSNTSTSSSHFEENDEDT----------------SEELVVDES-------NSDSTS 527

Query: 303 YLCQTIAAEENNENKIRSVINAKEEKKTMKYQFGRKVKSSCSKYLVPITNQQSDI-ACDP 361
              +   ++  N      + NAK++ +  K   GRK+K   S YL P+T ++  + AC  
Sbjct: 528 LPAKVPKSQNTN------MYNAKKQSRAPKCHLGRKMKPDMSNYLAPVTKRRRRLTACSR 581

Query: 362 KDSSCSNKNMSAERQLNEDESHCTAKSHDTCEHMVVQESPM-QNSSPASSLAKDSPVESN 420
            ++S S        +L ++ES      HD+ E +  +  P+ +    +SS  KDS ++  
Sbjct: 582 AETSQSTITFLVGPELKQEESGGCIGKHDSDEIIHCKVVPLTEKLCSSSSSCKDSRIDGR 641

Query: 421 EGIVGENCLGREAYPENTQSPKLIDLNIPHVSPDFPVTEPIMT-DREQDDDNSCENKSVF 479
           EG++  NC G E   E  Q   +IDLN+P V PD    EP++    E+ DD +       
Sbjct: 642 EGMLSSNCSGAEHPREELQFRTMIDLNLP-VLPDAETGEPVLVASSERQDDQA------- 693

Query: 480 LSGTGQQPEPFKLPDAGPHLAQQPLANSRRQSTRNRPLTTKALEALELGFFSPKKKRK-- 537
            S     P   K      +  Q P  NSRRQSTRNRPLTTKALEAL  GF + +++R+  
Sbjct: 694 -SKQADDPNALKTSIGVANSEQPPNMNSRRQSTRNRPLTTKALEALASGFLNTRRRRRKR 752

Query: 538 -----GADISESNSLSGSSRQVRKRIRV 560
                G D+     +S  SR+ R ++RV
Sbjct: 753 TEAFPGEDL-----ISRPSRRARCKMRV 775


>GSVIVT01031092001 assembled CDS
          Length = 755

 Score =  333 bits (853), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 165/243 (67%), Positives = 188/243 (77%)

Query: 3   SMLQVSRKFAEGKISFEEYVFTLKSAVGINMFIEAVGIGKGKHDLTGIAMEPTKPGHINS 62
           ++L+VS+ FAEG+ S  EYV +LK  VGI   IEAVG+GKGK  LTGI MEP K     S
Sbjct: 239 TLLEVSKSFAEGRTSLAEYVSSLKITVGICNLIEAVGVGKGKDGLTGIVMEPIKIHQFFS 298

Query: 63  IRPEIPIGKACSSLTSSDIIKFLTGDFRLSKARSNHLFWEAVWPRLLARGWHSEQPKDNG 122
           +RPEIPIGKACSSLTSSDIIKFLTGDFRLSKARSN LFWEAVWPRLLARGWHSEQPK+ G
Sbjct: 299 VRPEIPIGKACSSLTSSDIIKFLTGDFRLSKARSNDLFWEAVWPRLLARGWHSEQPKNEG 358

Query: 123 SSGSKHSLVFLIPGVKKFSRRRLVKSKHYFDSVSDVLNKVASDPGLLELEIEEVKGSKHK 182
            + SKHSLVFL+PGVKKFSRR+LVK  HYFDS+SDVL+KVAS+P +LELE EE   S  K
Sbjct: 359 CASSKHSLVFLVPGVKKFSRRKLVKGDHYFDSISDVLSKVASEPKILELEDEETGVSSCK 418

Query: 183 EECNWDPSLKLDQDGLINKQHQCYLQPHRSNYSQDVPKFTVVDTSLAHGAEQHKVRELRS 242
           E   W P  KLD D   + Q  CYL+P  S  + ++ KFTVVDTSLA G +  KVREL+S
Sbjct: 419 EGNGWVPEAKLDNDDPSDHQRHCYLKPRVSTCNLNLMKFTVVDTSLACGEKSSKVRELKS 478

Query: 243 LPV 245
           LPV
Sbjct: 479 LPV 481



 Score = 75.5 bits (184), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 80/224 (35%), Positives = 108/224 (48%), Gaps = 19/224 (8%)

Query: 356 DIACDPKDSSCSNKNMSAERQLNEDES-HCTAKSHDT-----CEHMVVQE--SPMQNSSP 407
           D + D +D S S  +MS   Q N   S H  A SH +      ++ V QE  SP + +S 
Sbjct: 501 DSSEDSQDESDS-ADMSLNGQKNTTNSNHAKAISHSSSLTQRVKNDVSQEGPSPREKASS 559

Query: 408 ASSLAKDSPVESNEGIVGENCLGREAYPENTQSPK---LIDLNIPHVSPDFPVTEPIMTD 464
            SS    SP E    I+G   +G +   E    P+   LIDLN+P V  D    E + T+
Sbjct: 560 ISSSDGGSP-EDETVILGGTSVGMDLSHEKNDKPQTRPLIDLNLPQVPSDSENGERLATN 618

Query: 465 REQDDDNSCENKSVFLSGTG---QQPEPFKLPDAGPHLAQQPLANSRRQSTRNRPLTTKA 521
            E     S  N S   S      +  +  +         +QP+   +RQSTRNRPLTTKA
Sbjct: 619 VENSQVASTANGSCCSSDRNILMEDSKALRTSVNAGSAEEQPIMKPQRQSTRNRPLTTKA 678

Query: 522 LEALELGFFSPKKKRKGADI-SESNSLSGSSRQVRKRIRVKATP 564
           LEAL  GF + ++KRKG ++ +E N +   SR  R R RV  TP
Sbjct: 679 LEALASGFLNTRRKRKGTEVQAEENPILRPSR--RARSRVTGTP 720