Jatropha Genome Database
- JcCB0108161.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0108161.10 - phase: 1 /pseudo/partial
(91 letters)
Database: grape_pep_20100319
26,346 sequences; 9,959,944 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
GSVIVT01009676001 assembled CDS 86 3e-18
GSVIVT01028236001 assembled CDS 66 3e-12
GSVIVT01017237001 assembled CDS 66 3e-12
GSVIVT01035466001 assembled CDS 64 1e-11
GSVIVT01006619001 assembled CDS 64 2e-11
GSVIVT01015485001 assembled CDS 62 4e-11
GSVIVT01006618001 assembled CDS 60 2e-10
GSVIVT01028930001 assembled CDS 54 2e-08
GSVIVT01014894001 assembled CDS 52 7e-08
GSVIVT01000506001 assembled CDS 50 2e-07
GSVIVT01000497001 assembled CDS 50 2e-07
GSVIVT01014943001 assembled CDS 50 2e-07
GSVIVT01031038001 assembled CDS 50 2e-07
GSVIVT01000499001 assembled CDS 50 2e-07
GSVIVT01014890001 assembled CDS 49 4e-07
GSVIVT01015099001 assembled CDS 47 1e-06
GSVIVT01014905001 assembled CDS 46 4e-06
>GSVIVT01009676001 assembled CDS
Length = 501
Score = 86.3 bits (212), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 41/83 (49%), Positives = 54/83 (65%), Gaps = 2/83 (2%)
Query: 4 LYLLKLVYSILWVPHKTQRHFRKQGIQGPDYRPIIGNSSEMKLKREEAKSKVSD--DHSI 61
+ + K V+SI+WVP + Q+HFR QGI GP YRPI GN E + EA+SK H I
Sbjct: 12 ILVFKFVHSIIWVPWRIQQHFRTQGIGGPGYRPISGNVGEFQRMYSEAQSKSMSGLQHDI 71
Query: 62 LNRVVPAYSTWSRMYGKNYLYWF 84
L+RV+P YS WS YGK +++W
Sbjct: 72 LHRVLPHYSRWSGAYGKTFIWWL 94
>GSVIVT01028236001 assembled CDS
Length = 521
Score = 66.2 bits (160), Expect = 3e-12, Method: Composition-based stats.
Identities = 34/90 (37%), Positives = 52/90 (57%), Gaps = 3/90 (3%)
Query: 1 ILFLYLLKLVYSIL-WVPHKTQRHFRKQGIQGPDYRPIIGNSSEMKLKREEAKSKV--SD 57
++F+ ++ + IL W P+ R FRKQGI+GP Y + G+ E++ + A+ V +
Sbjct: 13 VIFISIIWQICRILFWRPYVVTRCFRKQGIRGPPYSVLSGSLHEIERLKNAARGSVLETS 72
Query: 58 DHSILNRVVPAYSTWSRMYGKNYLYWFWKQ 87
+ I+ RVVP Y WS YG +LYWF Q
Sbjct: 73 SNDIIQRVVPHYHRWSLDYGDTFLYWFGTQ 102
>GSVIVT01017237001 assembled CDS
Length = 510
Score = 65.9 bits (159), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 51/85 (60%), Gaps = 4/85 (4%)
Query: 3 FLYLLKLVYSILWVPHKTQRHFRKQGIQGPDYRPIIGNSSE---MKLKREEAKSKVSDDH 59
+++LK+V + W P + ++HF KQGI+GP Y+ IGN E + LK +S DH
Sbjct: 18 LVFVLKVVDYLWWRPKRIEKHFSKQGIRGPPYQFFIGNIKEIVGLTLKTSSQPMPLS-DH 76
Query: 60 SILNRVVPAYSTWSRMYGKNYLYWF 84
+IL RV+ Y W ++YG +L WF
Sbjct: 77 NILPRVLSFYHHWKKIYGATFLVWF 101
>GSVIVT01035466001 assembled CDS
Length = 512
Score = 64.3 bits (155), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 56/87 (64%), Gaps = 2/87 (2%)
Query: 1 ILFLY-LLKLVYSILWVPHKTQRHFRKQGIQGPDYRPIIGNSSEMKLKREEAKSK-VSDD 58
IL +Y LL+ VY+I W P ++ R+QGI+G Y+P+ G+ +KL +EA+SK ++ +
Sbjct: 15 ILVVYGLLRAVYTIWWRPKSLEKQLRQQGIRGTRYKPMYGDMKALKLSFQEAQSKPMTLN 74
Query: 59 HSILNRVVPAYSTWSRMYGKNYLYWFW 85
HSI+ RV+P + + YGK + W +
Sbjct: 75 HSIVPRVIPFFHQMFQNYGKISMSWIF 101
>GSVIVT01006619001 assembled CDS
Length = 557
Score = 63.5 bits (153), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 55/85 (64%), Gaps = 2/85 (2%)
Query: 1 ILFLY-LLKLVYSILWVPHKTQRHFRKQGIQGPDYRPIIGNSSEMKLKREEAKSK-VSDD 58
IL +Y LL++VYSI W P ++ R+QGI+G Y+ + G++ MK EA+SK ++ +
Sbjct: 61 ILTVYTLLRVVYSIWWRPKSLEKQLRRQGIRGTHYKLLFGDAKAMKQSFMEARSKPMALN 120
Query: 59 HSILNRVVPAYSTWSRMYGKNYLYW 83
HSI+ RV+P Y ++ YGK + W
Sbjct: 121 HSIVPRVIPFYHEMAQKYGKVSVSW 145
>GSVIVT01015485001 assembled CDS
Length = 542
Score = 62.4 bits (150), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 15 WVPHKTQRHFRKQGIQGPDYRPIIGNSSEM-KLKREEAKSKVSDDHSILNRVVPAYSTWS 73
W P K + HF KQGI+GP YR IGN E+ L + + + H+IL RV+ Y W
Sbjct: 30 WRPRKIEHHFSKQGIRGPPYRFFIGNVKELVGLMLKASSQPMPFSHNILPRVLSFYHHWK 89
Query: 74 RMYGKNYLYWF 84
++YG +L WF
Sbjct: 90 KIYGATFLVWF 100
>GSVIVT01006618001 assembled CDS
Length = 513
Score = 60.5 bits (145), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 54/85 (63%), Gaps = 2/85 (2%)
Query: 1 ILFLYLL-KLVYSILWVPHKTQRHFRKQGIQGPDYRPIIGNSSEMKLKREEAKSK-VSDD 58
IL +Y L ++VYS+ W P ++ R+QGI+G Y+ + G++ MK EA+SK ++ +
Sbjct: 17 ILTMYTLSRVVYSVWWRPKSLEKQLRRQGIRGTRYKLLFGDAKAMKQSFMEARSKPMALN 76
Query: 59 HSILNRVVPAYSTWSRMYGKNYLYW 83
HSI+ RV+P Y ++ YGK + W
Sbjct: 77 HSIVPRVLPFYHEIAQKYGKVSVSW 101
>GSVIVT01028930001 assembled CDS
Length = 517
Score = 53.9 bits (128), Expect = 2e-08, Method: Composition-based stats.
Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 2 LFLYLLKLVYSILWVPHKTQRHFRKQGIQGPDYRPIIGNSSEMKL-KREEAKSKVSDDHS 60
L L ++V+S P++ R R G++GP +GN EMK KR + H
Sbjct: 19 LLFVLWRVVFSCWISPNRVYRRIRMNGLEGPPPSFPLGNIDEMKKDKRSSSSGYSGISHD 78
Query: 61 ILNRVVPAYSTWSRMYGKNYLYWF 84
I + V P +S W++ YGK ++YW
Sbjct: 79 IHSTVFPYFSRWTKSYGKVFIYWL 102
>GSVIVT01014894001 assembled CDS
Length = 550
Score = 51.6 bits (122), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 50/85 (58%), Gaps = 9/85 (10%)
Query: 6 LLKLVYSIL-WV---PHKTQRHFRKQGIQGPDYRPIIGNSSEMKLKREEAKSK---VSDD 58
L+ V+ +L WV P + +R R+QG+ G YR + G+S EM +EA S+ +SDD
Sbjct: 16 LISCVWRLLNWVWLRPKRLERCLREQGLAGNSYRLLQGDSKEMSRMMKEAYSRPISLSDD 75
Query: 59 HSILNRVVPAYSTWSRMYGKNYLYW 83
I+ RV+P + + + YGKN+ W
Sbjct: 76 --IVQRVLPFHCHFIKKYGKNFFTW 98
>GSVIVT01000506001 assembled CDS
Length = 417
Score = 50.4 bits (119), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 5/71 (7%)
Query: 17 PHKTQRHFRKQGIQGPDYRPIIGNSSEMKLKREEAKSK---VSDDHSILNRVVPAYSTWS 73
P + +R R+QG+ G YR + G+ EM + +EA S+ +SDD I RV+P + +
Sbjct: 31 PKRLERCLREQGLAGNSYRLLHGDFKEMSMMLKEAYSRPISLSDD--IAPRVLPFHCHFI 88
Query: 74 RMYGKNYLYWF 84
+ YGKN+ WF
Sbjct: 89 KKYGKNFFAWF 99
>GSVIVT01000497001 assembled CDS
Length = 629
Score = 50.4 bits (119), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 50/93 (53%), Gaps = 11/93 (11%)
Query: 1 ILFLYLLKLVYS---ILWV---PHKTQRHFRKQGIQGPDYRPIIGNSSEMKLKREEAKSK 54
I F ++ L+Y+ + WV P K +R R+QG+ G YR + G+ EM EA S+
Sbjct: 78 ISFAFITLLIYAWRLLNWVWLRPKKLERCLRQQGLTGNSYRLLHGDFREMLRMISEANSR 137
Query: 55 ---VSDDHSILNRVVPAYSTWSRMYGKNYLYWF 84
+SDD I+ RV+P + + YGKNY W
Sbjct: 138 SISLSDD--IVQRVLPFHCHSIKKYGKNYFIWM 168
>GSVIVT01014943001 assembled CDS
Length = 505
Score = 50.1 bits (118), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 48/86 (55%), Gaps = 5/86 (5%)
Query: 2 LFLYLLKLVYSILWVPHKTQRHFRKQGIQGPDYRPIIGNSSEMKLKREEAKSK---VSDD 58
L +Y +L+ S+ P K +R+ R+QG+ G YR + G+ EM +EA S+ +SDD
Sbjct: 15 LLIYAWRLLNSVWLKPKKIERYLRQQGLIGNSYRLLHGDFREMSRMIDEANSRPISLSDD 74
Query: 59 HSILNRVVPAYSTWSRMYGKNYLYWF 84
I+ RV+P + + YGKN W
Sbjct: 75 --IVQRVLPFHYHSIKKYGKNCFIWM 98
>GSVIVT01031038001 assembled CDS
Length = 515
Score = 50.1 bits (118), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 44/84 (52%), Gaps = 6/84 (7%)
Query: 6 LLKLVYSIL----WVPHKTQRHFRKQGIQGPDYRPIIGNSSEMKLKREEAKSKVSDD--H 59
LL+ Y+ + P + ++ QG++GP R ++GN +M ++ S D H
Sbjct: 16 LLRAAYNTISCYWLTPRRIKKIMENQGVRGPKPRFLVGNIMDMAALVSKSTSTDMDSISH 75
Query: 60 SILNRVVPAYSTWSRMYGKNYLYW 83
+ R++P + WS+ YGK ++YW
Sbjct: 76 DTVGRLLPHFVAWSKQYGKRFIYW 99
>GSVIVT01000499001 assembled CDS
Length = 529
Score = 50.1 bits (118), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 48/91 (52%), Gaps = 7/91 (7%)
Query: 1 ILFLYLLKLVYS---ILWV---PHKTQRHFRKQGIQGPDYRPIIGNSSEMKLKREEAKSK 54
I F ++ L+Y+ + WV P K +R R+QGI G YR + G+ EM EA S+
Sbjct: 21 ISFAFITLLIYAWRLLNWVWLRPKKLERCLRQQGITGNSYRLLHGDVREMLRMISEANSR 80
Query: 55 -VSDDHSILNRVVPAYSTWSRMYGKNYLYWF 84
+S I+ RV+P + + YGKNY W
Sbjct: 81 PISLSDEIVQRVLPFHYHSLKKYGKNYFIWM 111
>GSVIVT01014890001 assembled CDS
Length = 470
Score = 48.9 bits (115), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 46/78 (58%), Gaps = 6/78 (7%)
Query: 10 VYSILWV-PHKTQRHFRKQGIQGPDYRPIIGNSSEMKLKREEAKSK---VSDDHSILNRV 65
+ ++W+ P + +R R+QG+ G YRP+ G++ ++ + +EA S+ +SDD I+ RV
Sbjct: 23 AFYLVWLRPRRLERCLRRQGLMGNSYRPLHGDAKKVSIMLKEANSRPINLSDD--IVPRV 80
Query: 66 VPAYSTWSRMYGKNYLYW 83
+P + YGKN W
Sbjct: 81 IPFLYKTIQQYGKNSFTW 98
>GSVIVT01015099001 assembled CDS
Length = 471
Score = 47.4 bits (111), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 6 LLKLVYSILWVPHKTQRHFRKQGIQGPDYRPIIGNSSE-MKLKREEAKSKVSDDHSILNR 64
+L++ YSI W P ++ R+QGI+G Y+ ++G+ E ++L E ++ +H I++R
Sbjct: 21 VLRVSYSIWWKPKWLEKRLRQQGIRGTPYKLVMGDMKEYIRLITEAWSKPMNLNHHIVSR 80
Query: 65 VVPAYSTWSRMYGKNYLYW 83
V P + YGK L+W
Sbjct: 81 VDPFTQNNMQQYGKVSLFW 99
>GSVIVT01014905001 assembled CDS
Length = 235
Score = 45.8 bits (107), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 47/90 (52%), Gaps = 13/90 (14%)
Query: 6 LLKLVYSILWV--------PHKTQRHFRKQGIQGPDYRPIIGNSSEMKLKREEAKSK--- 54
L ++ S LW P + +R R+QG+ G YR + G+ EM + +EA S+
Sbjct: 12 FLTVLISCLWRLLNWVWLRPKRLERCLREQGLAGNSYRLLHGDFKEMSMMLKEAYSRPIS 71
Query: 55 VSDDHSILNRVVPAYSTWSRMYGKNYLYWF 84
+SDD + RV+P + + + YGKN WF
Sbjct: 72 LSDDTT--PRVLPFHFHFIKKYGKNSFAWF 99