Jatropha Genome Database

JcCB0107551.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0107551.10 - phase: 0 /partial
         (165 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01037466001 assembled CDS                                       251   2e-67

>GSVIVT01037466001 assembled CDS
          Length = 377

 Score =  251 bits (640), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 124/166 (74%), Positives = 143/166 (86%), Gaps = 1/166 (0%)

Query: 1   MKSIPLILMGCGGVGRQLIQHIVSCRSLHAKQGVHLRVVGVCDSKSLVAASDVFTRELND 60
           MK+IP+IL+GCGGVGR L+QHIVSCRSLHAK GV LRVVGV DSKSL+ ASDVFTREL+D
Sbjct: 1   MKNIPVILLGCGGVGRHLLQHIVSCRSLHAKLGVRLRVVGVSDSKSLLLASDVFTRELDD 60

Query: 61  AFLSEVCRVKLNGSSLSTLADF-DECLVYSNSESKRKVIDIAALLGKSTGLAFVDCSASS 119
            FL+EV RVKL GSSL TL+ F +EC V++NSE+ R VID A  L KSTGL  VDCSASS
Sbjct: 61  TFLNEVSRVKLGGSSLKTLSSFVNECQVFANSEATRTVIDTATRLSKSTGLVVVDCSASS 120

Query: 120 ETIGVLNQVVDLRCCIVLANKKPLTSTLEDYDKLVSYPRRIRHEST 165
           ET+GVLNQ VDL CCIVLANKKPLT+ ++DYDKLV++PRRIR+EST
Sbjct: 121 ETMGVLNQAVDLGCCIVLANKKPLTAAMDDYDKLVAHPRRIRYEST 166