Jatropha Genome Database

JcCB0107371.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0107371.10 + phase: 0 /partial
         (116 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01023812001 assembled CDS                                       182   3e-47
GSVIVT01009758001 assembled CDS                                       170   1e-43

>GSVIVT01023812001 assembled CDS
          Length = 608

 Score =  182 bits (461), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 83/110 (75%), Positives = 95/110 (86%)

Query: 7   TNGELSCQMYQRSADMGLGVPFNIASYALLTCIVSHVCDLVPGDFVHVLGDAHVYRTHVR 66
           ++GELSCQMYQRSADMGLGVPFNIASYALLTC+++HVCDLVPGDF+HV+GD+HVY TH+R
Sbjct: 499 SHGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLVPGDFIHVIGDSHVYLTHIR 558

Query: 67  XXXXXXXXXXXXXXILKINPEKKNIDSFVAADFKLIGYDPHQKIEMKMAI 116
                         ILKINP+KKNIDSFVAADF+LIGYDPHQKIEMKMA+
Sbjct: 559 PLQEQLQKLPKPFPILKINPQKKNIDSFVAADFQLIGYDPHQKIEMKMAV 608


>GSVIVT01009758001 assembled CDS
          Length = 469

 Score =  170 bits (430), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 75/109 (68%), Positives = 93/109 (85%)

Query: 8   NGELSCQMYQRSADMGLGVPFNIASYALLTCIVSHVCDLVPGDFVHVLGDAHVYRTHVRX 67
           NGELSCQMYQRSADMGLGVPFNIASYALLTC+++HVC ++PGDF+ ++GDAH+Y+TH+R 
Sbjct: 361 NGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCGILPGDFILIIGDAHIYKTHIRP 420

Query: 68  XXXXXXXXXXXXXILKINPEKKNIDSFVAADFKLIGYDPHQKIEMKMAI 116
                        ILKINP+KK+I+SFVAADF+LIGY+PHQKIEMKM++
Sbjct: 421 LEEQLQKLPKPFPILKINPQKKDIESFVAADFELIGYNPHQKIEMKMSV 469